Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04246

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04245 and H281DRAFT_04246 are separated by 256 nucleotidesH281DRAFT_04246 and H281DRAFT_04247 are separated by 224 nucleotides H281DRAFT_04245: H281DRAFT_04245 - putative metalloprotease, at 364,171 to 364,932 _04245 H281DRAFT_04246: H281DRAFT_04246 - glutathione S-transferase, at 365,189 to 365,803 _04246 H281DRAFT_04247: H281DRAFT_04247 - aminopeptidase P Metallo peptidase. MEROPS family M24B, at 366,028 to 367,419 _04247 Position (kb) 365 366Strain fitness (log2 ratio) -2 -1 0 1 2at 364.242 kb on + strandat 364.242 kb on + strandat 364.243 kb on - strandat 364.261 kb on + strand, within H281DRAFT_04245at 364.261 kb on + strand, within H281DRAFT_04245at 364.261 kb on + strand, within H281DRAFT_04245at 364.337 kb on + strand, within H281DRAFT_04245at 364.338 kb on - strand, within H281DRAFT_04245at 364.338 kb on - strand, within H281DRAFT_04245at 364.381 kb on - strand, within H281DRAFT_04245at 364.479 kb on - strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.503 kb on + strand, within H281DRAFT_04245at 364.541 kb on - strand, within H281DRAFT_04245at 364.587 kb on - strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.640 kb on + strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.641 kb on - strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.649 kb on + strand, within H281DRAFT_04245at 364.703 kb on - strand, within H281DRAFT_04245at 364.716 kb on - strand, within H281DRAFT_04245at 364.722 kb on + strand, within H281DRAFT_04245at 364.722 kb on + strand, within H281DRAFT_04245at 364.908 kb on + strandat 364.909 kb on - strandat 364.951 kb on + strandat 364.952 kb on - strandat 364.972 kb on + strandat 365.109 kb on + strandat 365.159 kb on - strandat 365.207 kb on - strandat 365.207 kb on - strandat 365.207 kb on - strandat 365.213 kb on - strandat 365.213 kb on - strandat 365.343 kb on + strand, within H281DRAFT_04246at 365.344 kb on - strand, within H281DRAFT_04246at 365.596 kb on - strand, within H281DRAFT_04246at 365.725 kb on - strand, within H281DRAFT_04246at 365.836 kb on + strandat 365.836 kb on + strandat 365.837 kb on - strandat 366.016 kb on + strandat 366.193 kb on + strand, within H281DRAFT_04247at 366.193 kb on + strand, within H281DRAFT_04247at 366.193 kb on + strand, within H281DRAFT_04247at 366.193 kb on + strand, within H281DRAFT_04247at 366.199 kb on + strand, within H281DRAFT_04247at 366.199 kb on + strand, within H281DRAFT_04247at 366.199 kb on + strand, within H281DRAFT_04247at 366.199 kb on + strand, within H281DRAFT_04247at 366.200 kb on - strand, within H281DRAFT_04247at 366.200 kb on - strand, within H281DRAFT_04247at 366.202 kb on + strand, within H281DRAFT_04247at 366.680 kb on - strand, within H281DRAFT_04247at 366.739 kb on + strand, within H281DRAFT_04247at 366.739 kb on + strand, within H281DRAFT_04247at 366.740 kb on - strand, within H281DRAFT_04247at 366.740 kb on - strand, within H281DRAFT_04247at 366.741 kb on + strand, within H281DRAFT_04247at 366.741 kb on + strand, within H281DRAFT_04247at 366.741 kb on + strand, within H281DRAFT_04247

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
364,242 + -1.6
364,242 + +0.3
364,243 - +0.4
364,261 + H281DRAFT_04245 0.12 +0.5
364,261 + H281DRAFT_04245 0.12 +0.5
364,261 + H281DRAFT_04245 0.12 -0.0
364,337 + H281DRAFT_04245 0.22 -0.1
364,338 - H281DRAFT_04245 0.22 +0.3
364,338 - H281DRAFT_04245 0.22 -0.7
364,381 - H281DRAFT_04245 0.28 +0.7
364,479 - H281DRAFT_04245 0.40 -0.2
364,503 + H281DRAFT_04245 0.44 -0.0
364,503 + H281DRAFT_04245 0.44 +1.4
364,503 + H281DRAFT_04245 0.44 -0.3
364,541 - H281DRAFT_04245 0.49 -0.4
364,587 - H281DRAFT_04245 0.55 +0.0
364,640 + H281DRAFT_04245 0.62 -1.0
364,640 + H281DRAFT_04245 0.62 +0.6
364,640 + H281DRAFT_04245 0.62 +0.4
364,640 + H281DRAFT_04245 0.62 +0.3
364,641 - H281DRAFT_04245 0.62 +1.2
364,641 - H281DRAFT_04245 0.62 -0.1
364,641 - H281DRAFT_04245 0.62 +1.1
364,641 - H281DRAFT_04245 0.62 -1.9
364,641 - H281DRAFT_04245 0.62 -0.1
364,641 - H281DRAFT_04245 0.62 +0.2
364,641 - H281DRAFT_04245 0.62 +0.9
364,649 + H281DRAFT_04245 0.63 -0.5
364,649 + H281DRAFT_04245 0.63 +1.2
364,649 + H281DRAFT_04245 0.63 -2.0
364,703 - H281DRAFT_04245 0.70 +0.6
364,716 - H281DRAFT_04245 0.72 -0.2
364,722 + H281DRAFT_04245 0.72 -0.3
364,722 + H281DRAFT_04245 0.72 +0.7
364,908 + -0.2
364,909 - -0.3
364,951 + +0.1
364,952 - -0.1
364,972 + -0.2
365,109 + -0.5
365,159 - -0.1
365,207 - -0.4
365,207 - +0.8
365,207 - -0.1
365,213 - -0.4
365,213 - +1.0
365,343 + H281DRAFT_04246 0.25 -0.4
365,344 - H281DRAFT_04246 0.25 -1.2
365,596 - H281DRAFT_04246 0.66 -1.6
365,725 - H281DRAFT_04246 0.87 -1.1
365,836 + +0.2
365,836 + -1.0
365,837 - +0.1
366,016 + -0.9
366,193 + H281DRAFT_04247 0.12 -0.5
366,193 + H281DRAFT_04247 0.12 +0.4
366,193 + H281DRAFT_04247 0.12 +0.3
366,193 + H281DRAFT_04247 0.12 -0.6
366,199 + H281DRAFT_04247 0.12 +0.7
366,199 + H281DRAFT_04247 0.12 +0.4
366,199 + H281DRAFT_04247 0.12 +0.6
366,199 + H281DRAFT_04247 0.12 -1.8
366,200 - H281DRAFT_04247 0.12 +1.9
366,200 - H281DRAFT_04247 0.12 +1.6
366,202 + H281DRAFT_04247 0.12 -1.0
366,680 - H281DRAFT_04247 0.47 +0.3
366,739 + H281DRAFT_04247 0.51 -0.9
366,739 + H281DRAFT_04247 0.51 +0.0
366,740 - H281DRAFT_04247 0.51 +1.1
366,740 - H281DRAFT_04247 0.51 -2.0
366,741 + H281DRAFT_04247 0.51 +0.5
366,741 + H281DRAFT_04247 0.51 +2.6
366,741 + H281DRAFT_04247 0.51 -0.3

Or see this region's nucleotide sequence