Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04217 and H281DRAFT_04218 overlap by 4 nucleotides H281DRAFT_04218 and H281DRAFT_04219 are separated by 399 nucleotides H281DRAFT_04219 and H281DRAFT_04220 are separated by 21 nucleotides
H281DRAFT_04217: H281DRAFT_04217 - putative copper resistance protein D, at 336,514 to 337,443
_04217
H281DRAFT_04218: H281DRAFT_04218 - hypothetical protein, at 337,440 to 337,817
_04218
H281DRAFT_04219: H281DRAFT_04219 - Cytochrome c553, at 338,217 to 338,936
_04219
H281DRAFT_04220: H281DRAFT_04220 - Cytochrome c, mono- and diheme variants, at 338,958 to 340,256
_04220
Position (kb) 338
339 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 337.226 kb on + strand, within H281DRAFT_04217 at 337.227 kb on - strand, within H281DRAFT_04217 at 337.227 kb on - strand, within H281DRAFT_04217 at 337.227 kb on - strand, within H281DRAFT_04217 at 337.513 kb on + strand, within H281DRAFT_04218 at 337.751 kb on + strand, within H281DRAFT_04218 at 337.809 kb on + strand at 337.819 kb on + strand at 337.819 kb on + strand at 337.820 kb on - strand at 337.820 kb on - strand at 337.820 kb on - strand at 337.820 kb on - strand at 337.835 kb on + strand at 337.926 kb on + strand at 337.927 kb on - strand at 338.106 kb on + strand at 338.107 kb on - strand at 338.107 kb on - strand at 338.130 kb on - strand at 338.212 kb on + strand at 338.213 kb on - strand at 338.280 kb on + strand at 338.280 kb on + strand at 338.281 kb on - strand at 338.281 kb on - strand at 338.281 kb on - strand at 338.281 kb on - strand at 338.282 kb on + strand at 338.322 kb on - strand, within H281DRAFT_04219 at 338.325 kb on - strand at 338.378 kb on + strand at 338.378 kb on + strand, within H281DRAFT_04219 at 338.424 kb on + strand, within H281DRAFT_04219 at 338.425 kb on - strand, within H281DRAFT_04219 at 338.430 kb on + strand, within H281DRAFT_04219 at 338.431 kb on - strand, within H281DRAFT_04219 at 338.431 kb on - strand, within H281DRAFT_04219 at 338.484 kb on + strand, within H281DRAFT_04219 at 338.485 kb on - strand, within H281DRAFT_04219 at 338.485 kb on - strand, within H281DRAFT_04219 at 338.497 kb on - strand, within H281DRAFT_04219 at 338.511 kb on + strand, within H281DRAFT_04219 at 338.512 kb on - strand, within H281DRAFT_04219 at 338.532 kb on + strand, within H281DRAFT_04219 at 338.532 kb on + strand, within H281DRAFT_04219 at 338.532 kb on + strand, within H281DRAFT_04219 at 338.533 kb on - strand, within H281DRAFT_04219 at 338.533 kb on - strand, within H281DRAFT_04219 at 338.728 kb on - strand, within H281DRAFT_04219 at 339.114 kb on + strand at 339.114 kb on + strand, within H281DRAFT_04220 at 339.115 kb on - strand, within H281DRAFT_04220 at 339.138 kb on - strand, within H281DRAFT_04220 at 339.322 kb on - strand, within H281DRAFT_04220 at 339.346 kb on - strand, within H281DRAFT_04220 at 339.381 kb on + strand, within H281DRAFT_04220 at 339.381 kb on + strand, within H281DRAFT_04220 at 339.382 kb on - strand, within H281DRAFT_04220 at 339.382 kb on - strand, within H281DRAFT_04220 at 339.382 kb on - strand, within H281DRAFT_04220 at 339.382 kb on - strand, within H281DRAFT_04220 at 339.504 kb on + strand, within H281DRAFT_04220 at 339.505 kb on - strand, within H281DRAFT_04220 at 339.663 kb on + strand, within H281DRAFT_04220 at 339.807 kb on + strand, within H281DRAFT_04220 at 339.807 kb on + strand, within H281DRAFT_04220 at 339.808 kb on - strand, within H281DRAFT_04220 at 339.808 kb on - strand, within H281DRAFT_04220
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 337,226 + H281DRAFT_04217 0.77 -1.5 337,227 - H281DRAFT_04217 0.77 -0.2 337,227 - H281DRAFT_04217 0.77 +0.3 337,227 - H281DRAFT_04217 0.77 -0.1 337,513 + H281DRAFT_04218 0.19 -0.1 337,751 + H281DRAFT_04218 0.82 +2.8 337,809 + -0.3 337,819 + -2.5 337,819 + -0.4 337,820 - +1.0 337,820 - -0.8 337,820 - +0.6 337,820 - -0.8 337,835 + -0.9 337,926 + +0.3 337,927 - +0.3 338,106 + +0.4 338,107 - -0.2 338,107 - -0.2 338,130 - +1.1 338,212 + +1.3 338,213 - +1.2 338,280 + +2.2 338,280 + -1.3 338,281 - +1.8 338,281 - +1.9 338,281 - +0.7 338,281 - +2.7 338,282 + +3.0 338,322 - H281DRAFT_04219 0.15 +0.7 338,325 - +1.6 338,378 + -0.6 338,378 + H281DRAFT_04219 0.22 +0.8 338,424 + H281DRAFT_04219 0.29 +1.3 338,425 - H281DRAFT_04219 0.29 +2.1 338,430 + H281DRAFT_04219 0.30 +0.9 338,431 - H281DRAFT_04219 0.30 +3.9 338,431 - H281DRAFT_04219 0.30 +1.0 338,484 + H281DRAFT_04219 0.37 +1.7 338,485 - H281DRAFT_04219 0.37 +0.8 338,485 - H281DRAFT_04219 0.37 -0.1 338,497 - H281DRAFT_04219 0.39 +0.4 338,511 + H281DRAFT_04219 0.41 +0.5 338,512 - H281DRAFT_04219 0.41 +0.3 338,532 + H281DRAFT_04219 0.44 +0.0 338,532 + H281DRAFT_04219 0.44 +1.1 338,532 + H281DRAFT_04219 0.44 +1.2 338,533 - H281DRAFT_04219 0.44 +3.5 338,533 - H281DRAFT_04219 0.44 +3.6 338,728 - H281DRAFT_04219 0.71 +1.1 339,114 + +1.0 339,114 + H281DRAFT_04220 0.12 +1.4 339,115 - H281DRAFT_04220 0.12 +0.9 339,138 - H281DRAFT_04220 0.14 +1.2 339,322 - H281DRAFT_04220 0.28 +1.6 339,346 - H281DRAFT_04220 0.30 +0.7 339,381 + H281DRAFT_04220 0.33 +0.6 339,381 + H281DRAFT_04220 0.33 +3.2 339,382 - H281DRAFT_04220 0.33 -0.7 339,382 - H281DRAFT_04220 0.33 +3.1 339,382 - H281DRAFT_04220 0.33 +0.4 339,382 - H281DRAFT_04220 0.33 +1.1 339,504 + H281DRAFT_04220 0.42 +4.3 339,505 - H281DRAFT_04220 0.42 +2.2 339,663 + H281DRAFT_04220 0.54 +1.6 339,807 + H281DRAFT_04220 0.65 +1.3 339,807 + H281DRAFT_04220 0.65 +0.8 339,808 - H281DRAFT_04220 0.65 +1.0 339,808 - H281DRAFT_04220 0.65 +1.9
Or see this region's nucleotide sequence