Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03963

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03962 and H281DRAFT_03963 are separated by 152 nucleotidesH281DRAFT_03963 and H281DRAFT_03964 are separated by 66 nucleotides H281DRAFT_03962: H281DRAFT_03962 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 66,256 to 68,706 _03962 H281DRAFT_03963: H281DRAFT_03963 - molybdenum cofactor sulfurylase, at 68,859 to 69,875 _03963 H281DRAFT_03964: H281DRAFT_03964 - adenosine deaminase, at 69,942 to 70,988 _03964 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 68.019 kb on - strand, within H281DRAFT_03962at 68.104 kb on + strand, within H281DRAFT_03962at 68.105 kb on - strand, within H281DRAFT_03962at 68.105 kb on - strand, within H281DRAFT_03962at 68.325 kb on + strand, within H281DRAFT_03962at 68.339 kb on + strand, within H281DRAFT_03962at 68.340 kb on - strand, within H281DRAFT_03962at 68.386 kb on + strand, within H281DRAFT_03962at 68.843 kb on + strandat 68.844 kb on - strandat 69.145 kb on + strand, within H281DRAFT_03963at 69.146 kb on - strand, within H281DRAFT_03963at 69.200 kb on + strand, within H281DRAFT_03963at 69.455 kb on - strand, within H281DRAFT_03963at 69.517 kb on + strand, within H281DRAFT_03963at 69.573 kb on - strand, within H281DRAFT_03963at 69.576 kb on + strand, within H281DRAFT_03963at 69.576 kb on + strand, within H281DRAFT_03963at 69.577 kb on - strand, within H281DRAFT_03963at 69.603 kb on - strand, within H281DRAFT_03963at 69.603 kb on - strand, within H281DRAFT_03963at 70.007 kb on + strandat 70.111 kb on - strand, within H281DRAFT_03964at 70.111 kb on - strand, within H281DRAFT_03964at 70.111 kb on - strand, within H281DRAFT_03964at 70.146 kb on + strand, within H281DRAFT_03964at 70.146 kb on + strand, within H281DRAFT_03964at 70.146 kb on + strand, within H281DRAFT_03964at 70.147 kb on - strand, within H281DRAFT_03964at 70.147 kb on - strand, within H281DRAFT_03964at 70.149 kb on + strand, within H281DRAFT_03964at 70.188 kb on + strand, within H281DRAFT_03964at 70.189 kb on - strand, within H281DRAFT_03964at 70.189 kb on - strand, within H281DRAFT_03964at 70.206 kb on + strand, within H281DRAFT_03964at 70.207 kb on - strand, within H281DRAFT_03964at 70.207 kb on - strand, within H281DRAFT_03964at 70.207 kb on - strand, within H281DRAFT_03964at 70.441 kb on - strand, within H281DRAFT_03964at 70.581 kb on + strand, within H281DRAFT_03964at 70.582 kb on - strand, within H281DRAFT_03964at 70.587 kb on + strand, within H281DRAFT_03964at 70.587 kb on + strandat 70.587 kb on + strand, within H281DRAFT_03964at 70.821 kb on + strand, within H281DRAFT_03964at 70.837 kb on - strand, within H281DRAFT_03964at 70.837 kb on - strand, within H281DRAFT_03964at 70.837 kb on - strand, within H281DRAFT_03964

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
68,019 - H281DRAFT_03962 0.72 -1.7
68,104 + H281DRAFT_03962 0.75 -0.0
68,105 - H281DRAFT_03962 0.75 -2.0
68,105 - H281DRAFT_03962 0.75 -0.6
68,325 + H281DRAFT_03962 0.84 -0.2
68,339 + H281DRAFT_03962 0.85 +0.2
68,340 - H281DRAFT_03962 0.85 -1.0
68,386 + H281DRAFT_03962 0.87 +0.4
68,843 + -0.4
68,844 - -0.6
69,145 + H281DRAFT_03963 0.28 -1.4
69,146 - H281DRAFT_03963 0.28 -0.9
69,200 + H281DRAFT_03963 0.34 -3.5
69,455 - H281DRAFT_03963 0.59 -2.1
69,517 + H281DRAFT_03963 0.65 -2.2
69,573 - H281DRAFT_03963 0.70 -2.4
69,576 + H281DRAFT_03963 0.71 -1.3
69,576 + H281DRAFT_03963 0.71 -2.4
69,577 - H281DRAFT_03963 0.71 -2.0
69,603 - H281DRAFT_03963 0.73 -0.7
69,603 - H281DRAFT_03963 0.73 -0.1
70,007 + +1.2
70,111 - H281DRAFT_03964 0.16 -0.0
70,111 - H281DRAFT_03964 0.16 -0.1
70,111 - H281DRAFT_03964 0.16 +0.5
70,146 + H281DRAFT_03964 0.19 -0.6
70,146 + H281DRAFT_03964 0.19 -0.1
70,146 + H281DRAFT_03964 0.19 -0.0
70,147 - H281DRAFT_03964 0.20 -2.0
70,147 - H281DRAFT_03964 0.20 -0.9
70,149 + H281DRAFT_03964 0.20 +1.1
70,188 + H281DRAFT_03964 0.23 +1.3
70,189 - H281DRAFT_03964 0.24 +0.4
70,189 - H281DRAFT_03964 0.24 -0.6
70,206 + H281DRAFT_03964 0.25 -0.2
70,207 - H281DRAFT_03964 0.25 +0.3
70,207 - H281DRAFT_03964 0.25 -0.2
70,207 - H281DRAFT_03964 0.25 -0.4
70,441 - H281DRAFT_03964 0.48 -1.2
70,581 + H281DRAFT_03964 0.61 +1.0
70,582 - H281DRAFT_03964 0.61 -0.2
70,587 + H281DRAFT_03964 0.62 -0.1
70,587 + +0.5
70,587 + H281DRAFT_03964 0.62 +3.2
70,821 + H281DRAFT_03964 0.84 +0.1
70,837 - H281DRAFT_03964 0.85 -0.1
70,837 - H281DRAFT_03964 0.85 +1.5
70,837 - H281DRAFT_03964 0.85 -0.4

Or see this region's nucleotide sequence