Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03923

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03922 and H281DRAFT_03923 are separated by 19 nucleotidesH281DRAFT_03923 and H281DRAFT_03924 are separated by 52 nucleotides H281DRAFT_03922: H281DRAFT_03922 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 18,236 to 19,540 _03922 H281DRAFT_03923: H281DRAFT_03923 - prephenate dehydrogenase (EC 1.3.1.12), at 19,560 to 20,501 _03923 H281DRAFT_03924: H281DRAFT_03924 - histidinol-phosphate aminotransferase, at 20,554 to 21,666 _03924 Position (kb) 19 20 21Strain fitness (log2 ratio) -1 0 1at 19.545 kb on - strandat 19.545 kb on - strandat 19.545 kb on - strandat 19.545 kb on - strandat 19.545 kb on - strandat 19.545 kb on - strandat 20.649 kb on - strandat 20.762 kb on - strand, within H281DRAFT_03924at 20.766 kb on - strand, within H281DRAFT_03924at 20.766 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 20.890 kb on - strand, within H281DRAFT_03924at 21.069 kb on - strand, within H281DRAFT_03924at 21.078 kb on - strand, within H281DRAFT_03924at 21.157 kb on - strand, within H281DRAFT_03924at 21.300 kb on - strand, within H281DRAFT_03924

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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19,545 - -0.3
19,545 - +1.4
19,545 - +0.4
19,545 - -0.7
19,545 - +0.5
19,545 - -0.1
20,649 - -0.4
20,762 - H281DRAFT_03924 0.19 -1.0
20,766 - H281DRAFT_03924 0.19 +0.6
20,766 - H281DRAFT_03924 0.19 +0.7
20,890 - H281DRAFT_03924 0.30 -0.0
20,890 - H281DRAFT_03924 0.30 -0.6
20,890 - H281DRAFT_03924 0.30 +0.0
20,890 - H281DRAFT_03924 0.30 -0.1
21,069 - H281DRAFT_03924 0.46 +0.2
21,078 - H281DRAFT_03924 0.47 +1.0
21,157 - H281DRAFT_03924 0.54 +1.3
21,300 - H281DRAFT_03924 0.67 +1.2

Or see this region's nucleotide sequence