Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03709 and H281DRAFT_03710 are separated by 71 nucleotides H281DRAFT_03710 and H281DRAFT_03711 are separated by 2 nucleotides
H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441
_03709
H281DRAFT_03710: H281DRAFT_03710 - Nitrate/nitrite transporter NarK, at 224,513 to 225,820
_03710
H281DRAFT_03711: H281DRAFT_03711 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 225,823 to 226,953
_03711
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 223.566 kb on + strand, within H281DRAFT_03709 at 223.567 kb on - strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.870 kb on - strand, within H281DRAFT_03709 at 224.106 kb on + strand, within H281DRAFT_03709 at 224.222 kb on + strand, within H281DRAFT_03709 at 224.500 kb on + strand at 224.500 kb on + strand at 224.636 kb on + strand at 224.637 kb on - strand at 225.115 kb on - strand, within H281DRAFT_03710 at 225.115 kb on - strand, within H281DRAFT_03710 at 225.490 kb on + strand, within H281DRAFT_03710 at 225.491 kb on - strand, within H281DRAFT_03710 at 225.514 kb on - strand, within H281DRAFT_03710 at 225.695 kb on + strand at 225.695 kb on + strand at 225.695 kb on + strand at 225.790 kb on - strand at 225.797 kb on + strand at 225.955 kb on + strand, within H281DRAFT_03711 at 225.956 kb on - strand, within H281DRAFT_03711 at 226.082 kb on - strand, within H281DRAFT_03711 at 226.113 kb on + strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.472 kb on - strand, within H281DRAFT_03711 at 226.509 kb on - strand at 226.509 kb on - strand, within H281DRAFT_03711 at 226.510 kb on + strand, within H281DRAFT_03711 at 226.511 kb on - strand, within H281DRAFT_03711 at 226.660 kb on + strand, within H281DRAFT_03711 at 226.770 kb on + strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 223,566 + H281DRAFT_03709 0.31 -0.1 223,567 - H281DRAFT_03709 0.31 +1.3 223,620 + H281DRAFT_03709 0.36 +0.9 223,620 + H281DRAFT_03709 0.36 +0.3 223,620 + H281DRAFT_03709 0.36 +0.9 223,620 + H281DRAFT_03709 0.36 -0.4 223,620 + H281DRAFT_03709 0.36 -0.8 223,621 - H281DRAFT_03709 0.36 +0.6 223,621 - H281DRAFT_03709 0.36 -1.4 223,621 - H281DRAFT_03709 0.36 +1.3 223,621 - H281DRAFT_03709 0.36 +0.2 223,621 - H281DRAFT_03709 0.36 -1.3 223,621 - H281DRAFT_03709 0.36 -0.0 223,622 + H281DRAFT_03709 0.36 -0.4 223,622 + H281DRAFT_03709 0.36 -0.0 223,622 + H281DRAFT_03709 0.36 +0.9 223,870 - H281DRAFT_03709 0.55 -0.1 224,106 + H281DRAFT_03709 0.74 +0.1 224,222 + H281DRAFT_03709 0.83 +0.4 224,500 + +0.9 224,500 + -1.4 224,636 + +0.3 224,637 - +3.8 225,115 - H281DRAFT_03710 0.46 +0.6 225,115 - H281DRAFT_03710 0.46 +0.5 225,490 + H281DRAFT_03710 0.75 +1.6 225,491 - H281DRAFT_03710 0.75 +0.8 225,514 - H281DRAFT_03710 0.77 -0.2 225,695 + -1.3 225,695 + -1.8 225,695 + +0.2 225,790 - +0.1 225,797 + -1.4 225,955 + H281DRAFT_03711 0.12 +0.1 225,956 - H281DRAFT_03711 0.12 -0.1 226,082 - H281DRAFT_03711 0.23 -0.1 226,113 + H281DRAFT_03711 0.26 +0.5 226,196 - H281DRAFT_03711 0.33 +0.9 226,196 - H281DRAFT_03711 0.33 +0.5 226,196 - H281DRAFT_03711 0.33 +1.1 226,472 - H281DRAFT_03711 0.57 -0.8 226,509 - +1.4 226,509 - H281DRAFT_03711 0.61 +0.5 226,510 + H281DRAFT_03711 0.61 -0.4 226,511 - H281DRAFT_03711 0.61 +0.3 226,660 + H281DRAFT_03711 0.74 +0.3 226,770 + H281DRAFT_03711 0.84 +0.8 226,771 - H281DRAFT_03711 0.84 +1.1 226,771 - H281DRAFT_03711 0.84 -0.8 226,771 - H281DRAFT_03711 0.84 +0.0 226,771 - H281DRAFT_03711 0.84 +0.7
Or see this region's nucleotide sequence