Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03702

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03700 and H281DRAFT_03701 are separated by 1 nucleotidesH281DRAFT_03701 and H281DRAFT_03702 are separated by 24 nucleotidesH281DRAFT_03702 and H281DRAFT_03703 overlap by 4 nucleotidesH281DRAFT_03703 and H281DRAFT_03704 overlap by 4 nucleotides H281DRAFT_03700: H281DRAFT_03700 - acyl-CoA dehydrogenase, at 212,832 to 214,040 _03700 H281DRAFT_03701: H281DRAFT_03701 - Enoyl-CoA hydratase, at 214,042 to 214,893 _03701 H281DRAFT_03702: H281DRAFT_03702 - transcriptional regulator, MarR family, at 214,918 to 215,490 _03702 H281DRAFT_03703: H281DRAFT_03703 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 215,487 to 216,260 _03703 H281DRAFT_03704: H281DRAFT_03704 - anthraniloyl-CoA monooxygenase, at 216,257 to 218,629 _03704 Position (kb) 214 215 216Strain fitness (log2 ratio) -1 0 1at 214.110 kb on + strandat 214.290 kb on - strand, within H281DRAFT_03701at 214.703 kb on + strand, within H281DRAFT_03701at 214.704 kb on - strand, within H281DRAFT_03701at 214.785 kb on + strand, within H281DRAFT_03701at 215.080 kb on + strand, within H281DRAFT_03702at 215.152 kb on - strand, within H281DRAFT_03702at 215.705 kb on - strand, within H281DRAFT_03703at 215.813 kb on - strand, within H281DRAFT_03703

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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214,110 + +0.7
214,290 - H281DRAFT_03701 0.29 +0.6
214,703 + H281DRAFT_03701 0.78 -1.7
214,704 - H281DRAFT_03701 0.78 +0.1
214,785 + H281DRAFT_03701 0.87 -0.1
215,080 + H281DRAFT_03702 0.28 -0.1
215,152 - H281DRAFT_03702 0.41 -1.0
215,705 - H281DRAFT_03703 0.28 +0.1
215,813 - H281DRAFT_03703 0.42 +0.9

Or see this region's nucleotide sequence