Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03440

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03439 and H281DRAFT_03440 overlap by 25 nucleotidesH281DRAFT_03440 and H281DRAFT_03441 are separated by 77 nucleotides H281DRAFT_03439: H281DRAFT_03439 - Glycosyltransferase involved in cell wall bisynthesis, at 519,732 to 520,919 _03439 H281DRAFT_03440: H281DRAFT_03440 - PAP2 superfamily protein, at 520,895 to 521,530 _03440 H281DRAFT_03441: H281DRAFT_03441 - O-antigen ligase, at 521,608 to 522,855 _03441 Position (kb) 520 521 522Strain fitness (log2 ratio) -3 -2 -1 0 1at 519.933 kb on + strand, within H281DRAFT_03439at 519.934 kb on - strand, within H281DRAFT_03439at 519.992 kb on + strand, within H281DRAFT_03439at 520.164 kb on + strand, within H281DRAFT_03439at 520.165 kb on - strand, within H281DRAFT_03439at 520.359 kb on + strandat 520.360 kb on - strand, within H281DRAFT_03439at 520.450 kb on + strand, within H281DRAFT_03439at 520.736 kb on + strand, within H281DRAFT_03439at 520.737 kb on - strand, within H281DRAFT_03439at 520.918 kb on - strandat 521.174 kb on - strand, within H281DRAFT_03440at 521.174 kb on - strand, within H281DRAFT_03440at 521.507 kb on + strandat 521.520 kb on - strandat 521.520 kb on - strandat 521.598 kb on + strandat 521.848 kb on - strand, within H281DRAFT_03441at 522.099 kb on - strand, within H281DRAFT_03441at 522.443 kb on + strand, within H281DRAFT_03441at 522.444 kb on - strand, within H281DRAFT_03441at 522.503 kb on + strand, within H281DRAFT_03441

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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519,933 + H281DRAFT_03439 0.17 -0.1
519,934 - H281DRAFT_03439 0.17 +0.2
519,992 + H281DRAFT_03439 0.22 -0.9
520,164 + H281DRAFT_03439 0.36 -0.4
520,165 - H281DRAFT_03439 0.36 +0.2
520,359 + +0.8
520,360 - H281DRAFT_03439 0.53 +0.9
520,450 + H281DRAFT_03439 0.60 +0.4
520,736 + H281DRAFT_03439 0.85 +0.0
520,737 - H281DRAFT_03439 0.85 +0.8
520,918 - +0.4
521,174 - H281DRAFT_03440 0.44 +0.8
521,174 - H281DRAFT_03440 0.44 +1.1
521,507 + +0.8
521,520 - -0.1
521,520 - -0.0
521,598 + +0.0
521,848 - H281DRAFT_03441 0.19 -2.8
522,099 - H281DRAFT_03441 0.39 -1.8
522,443 + H281DRAFT_03441 0.67 -0.9
522,444 - H281DRAFT_03441 0.67 -0.5
522,503 + H281DRAFT_03441 0.72 +0.1

Or see this region's nucleotide sequence