Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03364

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03363 and H281DRAFT_03364 overlap by 8 nucleotidesH281DRAFT_03364 and H281DRAFT_03365 overlap by 4 nucleotides H281DRAFT_03363: H281DRAFT_03363 - fumarate reductase (CoM/CoB) subunit A, at 422,826 to 424,604 _03363 H281DRAFT_03364: H281DRAFT_03364 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 424,597 to 425,820 _03364 H281DRAFT_03365: H281DRAFT_03365 - choline dehydrogenase, at 425,817 to 427,457 _03365 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1 2at 423.672 kb on + strand, within H281DRAFT_03363at 424.211 kb on + strand, within H281DRAFT_03363at 424.212 kb on - strand, within H281DRAFT_03363at 424.412 kb on + strand, within H281DRAFT_03363at 424.636 kb on - strandat 425.005 kb on + strand, within H281DRAFT_03364at 425.162 kb on + strand, within H281DRAFT_03364at 425.199 kb on + strand, within H281DRAFT_03364at 425.320 kb on + strand, within H281DRAFT_03364at 425.320 kb on + strand, within H281DRAFT_03364at 425.342 kb on - strand, within H281DRAFT_03364at 425.512 kb on + strand, within H281DRAFT_03364at 425.567 kb on - strand, within H281DRAFT_03364at 425.713 kb on - strandat 425.727 kb on + strandat 425.750 kb on - strandat 425.750 kb on - strandat 426.134 kb on + strand, within H281DRAFT_03365at 426.482 kb on + strand, within H281DRAFT_03365at 426.482 kb on + strand, within H281DRAFT_03365at 426.708 kb on + strand, within H281DRAFT_03365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
423,672 + H281DRAFT_03363 0.48 +0.0
424,211 + H281DRAFT_03363 0.78 -0.3
424,212 - H281DRAFT_03363 0.78 +0.3
424,412 + H281DRAFT_03363 0.89 -2.0
424,636 - -0.4
425,005 + H281DRAFT_03364 0.33 +0.8
425,162 + H281DRAFT_03364 0.46 -0.9
425,199 + H281DRAFT_03364 0.49 -0.8
425,320 + H281DRAFT_03364 0.59 +1.8
425,320 + H281DRAFT_03364 0.59 -1.2
425,342 - H281DRAFT_03364 0.61 +0.8
425,512 + H281DRAFT_03364 0.75 +0.8
425,567 - H281DRAFT_03364 0.79 +0.3
425,713 - +0.3
425,727 + +0.0
425,750 - -0.0
425,750 - +0.8
426,134 + H281DRAFT_03365 0.19 -0.5
426,482 + H281DRAFT_03365 0.41 +0.6
426,482 + H281DRAFT_03365 0.41 +0.2
426,708 + H281DRAFT_03365 0.54 -0.2

Or see this region's nucleotide sequence