Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03306 and H281DRAFT_03307 overlap by 4 nucleotides H281DRAFT_03307 and H281DRAFT_03308 overlap by 28 nucleotides H281DRAFT_03308 and H281DRAFT_03309 are separated by 12 nucleotides H281DRAFT_03309 and H281DRAFT_03310 overlap by 4 nucleotides
H281DRAFT_03306: H281DRAFT_03306 - Cytochrome c, mono- and diheme variants, at 368,813 to 370,117
_03306
H281DRAFT_03307: H281DRAFT_03307 - Cytochrome c oxidase assembly factor CtaG, at 370,114 to 371,082
_03307
H281DRAFT_03308: H281DRAFT_03308 - hypothetical protein, at 371,055 to 371,387
_03308
H281DRAFT_03309: H281DRAFT_03309 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 371,400 to 372,050
_03309
H281DRAFT_03310: H281DRAFT_03310 - cytochrome c oxidase subunit 1, at 372,047 to 373,996
_03310
Position (kb) 371
372 Strain fitness (log2 ratio) -1
0
1 at 370.217 kb on + strand, within H281DRAFT_03307 at 370.740 kb on + strand, within H281DRAFT_03307 at 371.076 kb on - strand at 371.323 kb on + strand, within H281DRAFT_03308 at 371.324 kb on - strand, within H281DRAFT_03308 at 371.419 kb on + strand at 371.431 kb on + strand at 371.452 kb on - strand at 371.861 kb on - strand, within H281DRAFT_03309 at 371.866 kb on + strand, within H281DRAFT_03309 at 372.272 kb on - strand, within H281DRAFT_03310
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 370,217 + H281DRAFT_03307 0.11 +0.9 370,740 + H281DRAFT_03307 0.65 -0.0 371,076 - +0.2 371,323 + H281DRAFT_03308 0.80 +0.2 371,324 - H281DRAFT_03308 0.81 -0.9 371,419 + -0.4 371,431 + +0.1 371,452 - +0.5 371,861 - H281DRAFT_03309 0.71 +0.1 371,866 + H281DRAFT_03309 0.72 +0.6 372,272 - H281DRAFT_03310 0.12 -0.3
Or see this region's nucleotide sequence