Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03306

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03304 and H281DRAFT_03305 are separated by 282 nucleotidesH281DRAFT_03305 and H281DRAFT_03306 are separated by 31 nucleotidesH281DRAFT_03306 and H281DRAFT_03307 overlap by 4 nucleotidesH281DRAFT_03307 and H281DRAFT_03308 overlap by 28 nucleotides H281DRAFT_03304: H281DRAFT_03304 - amidohydrolase, PncC family, at 367,456 to 367,989 _03304 H281DRAFT_03305: H281DRAFT_03305 - Acetyltransferases, at 368,272 to 368,781 _03305 H281DRAFT_03306: H281DRAFT_03306 - Cytochrome c, mono- and diheme variants, at 368,813 to 370,117 _03306 H281DRAFT_03307: H281DRAFT_03307 - Cytochrome c oxidase assembly factor CtaG, at 370,114 to 371,082 _03307 H281DRAFT_03308: H281DRAFT_03308 - hypothetical protein, at 371,055 to 371,387 _03308 Position (kb) 368 369 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 368.588 kb on + strandat 368.589 kb on - strand, within H281DRAFT_03305at 368.690 kb on - strand, within H281DRAFT_03305at 368.690 kb on - strand, within H281DRAFT_03305at 368.690 kb on - strand, within H281DRAFT_03305at 369.069 kb on - strand, within H281DRAFT_03306at 369.718 kb on - strand, within H281DRAFT_03306at 369.907 kb on + strand, within H281DRAFT_03306at 370.217 kb on + strand, within H281DRAFT_03307at 370.740 kb on + strand, within H281DRAFT_03307at 371.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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368,588 + +0.8
368,589 - H281DRAFT_03305 0.62 +0.6
368,690 - H281DRAFT_03305 0.82 +0.2
368,690 - H281DRAFT_03305 0.82 +0.5
368,690 - H281DRAFT_03305 0.82 +0.8
369,069 - H281DRAFT_03306 0.20 -4.4
369,718 - H281DRAFT_03306 0.69 -0.4
369,907 + H281DRAFT_03306 0.84 -1.4
370,217 + H281DRAFT_03307 0.11 +0.9
370,740 + H281DRAFT_03307 0.65 -0.0
371,076 - +0.2

Or see this region's nucleotide sequence