Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03004

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03003 and H281DRAFT_03004 are separated by 371 nucleotidesH281DRAFT_03004 and H281DRAFT_03005 are separated by 356 nucleotidesH281DRAFT_03005 and H281DRAFT_03006 overlap by 23 nucleotides H281DRAFT_03003: H281DRAFT_03003 - Cyanate permease, at 27,368 to 28,771 _03003 H281DRAFT_03004: H281DRAFT_03004 - MFS transporter, MHS family, shikimate and dehydroshikimate transport protein, at 29,143 to 30,459 _03004 H281DRAFT_03005: H281DRAFT_03005 - hypothetical protein, at 30,816 to 31,034 _03005 H281DRAFT_03006: H281DRAFT_03006 - transcriptional regulator, GntR family, at 31,012 to 31,731 _03006 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.302 kb on - strand, within H281DRAFT_03003at 28.322 kb on + strand, within H281DRAFT_03003at 28.323 kb on - strand, within H281DRAFT_03003at 28.362 kb on + strand, within H281DRAFT_03003at 28.371 kb on + strand, within H281DRAFT_03003at 28.371 kb on + strand, within H281DRAFT_03003at 28.372 kb on - strand, within H281DRAFT_03003at 28.372 kb on - strand, within H281DRAFT_03003at 28.395 kb on + strand, within H281DRAFT_03003at 28.414 kb on + strand, within H281DRAFT_03003at 28.415 kb on - strand, within H281DRAFT_03003at 28.517 kb on + strand, within H281DRAFT_03003at 28.762 kb on + strandat 28.762 kb on + strandat 28.827 kb on + strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.869 kb on - strandat 28.869 kb on - strandat 28.870 kb on + strandat 28.871 kb on - strandat 28.871 kb on - strandat 28.887 kb on + strandat 29.078 kb on + strandat 29.079 kb on - strandat 29.126 kb on + strandat 29.179 kb on + strandat 29.179 kb on + strandat 29.211 kb on - strandat 29.334 kb on - strand, within H281DRAFT_03004at 29.377 kb on + strand, within H281DRAFT_03004at 29.432 kb on - strand, within H281DRAFT_03004at 29.502 kb on + strand, within H281DRAFT_03004at 29.502 kb on + strand, within H281DRAFT_03004at 29.502 kb on + strand, within H281DRAFT_03004at 29.503 kb on - strand, within H281DRAFT_03004at 29.503 kb on - strand, within H281DRAFT_03004at 29.503 kb on - strand, within H281DRAFT_03004at 29.504 kb on + strand, within H281DRAFT_03004at 29.505 kb on - strand, within H281DRAFT_03004at 29.633 kb on + strand, within H281DRAFT_03004at 29.633 kb on + strand, within H281DRAFT_03004at 29.634 kb on - strand, within H281DRAFT_03004at 29.660 kb on + strand, within H281DRAFT_03004at 29.660 kb on + strand, within H281DRAFT_03004at 29.661 kb on - strand, within H281DRAFT_03004at 29.661 kb on - strand, within H281DRAFT_03004at 29.821 kb on + strandat 29.975 kb on + strand, within H281DRAFT_03004at 30.118 kb on + strand, within H281DRAFT_03004at 30.118 kb on + strand, within H281DRAFT_03004at 30.118 kb on + strand, within H281DRAFT_03004at 30.119 kb on - strand, within H281DRAFT_03004at 30.121 kb on + strand, within H281DRAFT_03004at 30.169 kb on + strand, within H281DRAFT_03004at 30.169 kb on + strand, within H281DRAFT_03004at 30.289 kb on + strand, within H281DRAFT_03004at 30.459 kb on + strandat 30.460 kb on - strandat 30.510 kb on + strandat 30.510 kb on + strandat 30.551 kb on + strandat 30.551 kb on + strandat 30.552 kb on - strandat 30.554 kb on + strandat 30.554 kb on + strandat 30.591 kb on - strandat 30.640 kb on + strandat 30.643 kb on - strandat 30.663 kb on - strandat 30.663 kb on - strandat 30.697 kb on + strandat 30.698 kb on - strandat 30.702 kb on + strandat 30.738 kb on + strandat 30.775 kb on - strandat 30.986 kb on + strand, within H281DRAFT_03005at 30.986 kb on + strand, within H281DRAFT_03005at 30.986 kb on + strand, within H281DRAFT_03005at 30.987 kb on - strand, within H281DRAFT_03005at 30.987 kb on - strand, within H281DRAFT_03005at 31.064 kb on + strandat 31.064 kb on + strandat 31.105 kb on + strand, within H281DRAFT_03006at 31.144 kb on + strand, within H281DRAFT_03006at 31.144 kb on + strand, within H281DRAFT_03006at 31.145 kb on - strand, within H281DRAFT_03006at 31.282 kb on + strand, within H281DRAFT_03006

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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28,302 - H281DRAFT_03003 0.67 -0.5
28,322 + H281DRAFT_03003 0.68 -1.0
28,323 - H281DRAFT_03003 0.68 +0.7
28,362 + H281DRAFT_03003 0.71 -0.1
28,371 + H281DRAFT_03003 0.71 +0.2
28,371 + H281DRAFT_03003 0.71 +0.3
28,372 - H281DRAFT_03003 0.72 +0.5
28,372 - H281DRAFT_03003 0.72 +0.1
28,395 + H281DRAFT_03003 0.73 +1.5
28,414 + H281DRAFT_03003 0.75 +0.3
28,415 - H281DRAFT_03003 0.75 -0.1
28,517 + H281DRAFT_03003 0.82 +0.6
28,762 + +0.7
28,762 + -2.8
28,827 + +0.7
28,828 - -0.9
28,828 - +0.6
28,869 - +0.3
28,869 - -2.3
28,870 + +0.6
28,871 - +1.5
28,871 - -0.2
28,887 + -0.3
29,078 + +0.9
29,079 - +0.0
29,126 + +0.8
29,179 + +0.7
29,179 + +0.2
29,211 - -0.4
29,334 - H281DRAFT_03004 0.15 +0.7
29,377 + H281DRAFT_03004 0.18 +0.3
29,432 - H281DRAFT_03004 0.22 -0.4
29,502 + H281DRAFT_03004 0.27 +0.3
29,502 + H281DRAFT_03004 0.27 -0.8
29,502 + H281DRAFT_03004 0.27 +0.5
29,503 - H281DRAFT_03004 0.27 +0.9
29,503 - H281DRAFT_03004 0.27 -2.1
29,503 - H281DRAFT_03004 0.27 +0.4
29,504 + H281DRAFT_03004 0.27 +0.6
29,505 - H281DRAFT_03004 0.27 +0.3
29,633 + H281DRAFT_03004 0.37 +0.2
29,633 + H281DRAFT_03004 0.37 +0.0
29,634 - H281DRAFT_03004 0.37 +0.1
29,660 + H281DRAFT_03004 0.39 +0.2
29,660 + H281DRAFT_03004 0.39 +0.0
29,661 - H281DRAFT_03004 0.39 -0.7
29,661 - H281DRAFT_03004 0.39 +0.5
29,821 + +0.9
29,975 + H281DRAFT_03004 0.63 -0.7
30,118 + H281DRAFT_03004 0.74 -0.2
30,118 + H281DRAFT_03004 0.74 -0.9
30,118 + H281DRAFT_03004 0.74 -1.2
30,119 - H281DRAFT_03004 0.74 +1.0
30,121 + H281DRAFT_03004 0.74 +0.3
30,169 + H281DRAFT_03004 0.78 -0.4
30,169 + H281DRAFT_03004 0.78 -1.2
30,289 + H281DRAFT_03004 0.87 -1.0
30,459 + -0.3
30,460 - -0.5
30,510 + +0.5
30,510 + -0.6
30,551 + -0.0
30,551 + -0.3
30,552 - -0.4
30,554 + -1.1
30,554 + +0.8
30,591 - +0.6
30,640 + +0.9
30,643 - -0.4
30,663 - +0.9
30,663 - +0.9
30,697 + +1.7
30,698 - +0.3
30,702 + +0.2
30,738 + -0.5
30,775 - -0.7
30,986 + H281DRAFT_03005 0.78 +2.1
30,986 + H281DRAFT_03005 0.78 -0.0
30,986 + H281DRAFT_03005 0.78 -1.3
30,987 - H281DRAFT_03005 0.78 -0.7
30,987 - H281DRAFT_03005 0.78 -0.8
31,064 + -0.5
31,064 + -1.2
31,105 + H281DRAFT_03006 0.13 +0.0
31,144 + H281DRAFT_03006 0.18 -0.5
31,144 + H281DRAFT_03006 0.18 -1.4
31,145 - H281DRAFT_03006 0.18 -3.3
31,282 + H281DRAFT_03006 0.38 +1.2

Or see this region's nucleotide sequence