Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02953 and H281DRAFT_02954 are separated by 445 nucleotides H281DRAFT_02954 and H281DRAFT_02955 are separated by 117 nucleotides H281DRAFT_02955 and H281DRAFT_02956 are separated by 1 nucleotides H281DRAFT_02956 and H281DRAFT_02957 overlap by 4 nucleotides
H281DRAFT_02953: H281DRAFT_02953 - D-mannonate dehydratase (EC 4.2.1.8), at 567,649 to 568,710
_02953
H281DRAFT_02954: H281DRAFT_02954 - glyoxylase I family protein, at 569,156 to 569,569
_02954
H281DRAFT_02955: H281DRAFT_02955 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 569,687 to 570,274
_02955
H281DRAFT_02956: H281DRAFT_02956 - transcriptional regulator, GntR family, at 570,276 to 571,010
_02956
H281DRAFT_02957: H281DRAFT_02957 - Predicted xylanase/chitin deacetylase, at 571,007 to 571,948
_02957
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1 at 568.894 kb on - strand at 568.920 kb on - strand at 568.943 kb on - strand at 569.145 kb on + strand at 569.251 kb on + strand, within H281DRAFT_02954 at 569.251 kb on + strand, within H281DRAFT_02954 at 569.252 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.313 kb on - strand, within H281DRAFT_02954 at 569.432 kb on - strand, within H281DRAFT_02954 at 569.445 kb on + strand, within H281DRAFT_02954 at 569.445 kb on + strand, within H281DRAFT_02954 at 569.467 kb on - strand, within H281DRAFT_02954 at 569.481 kb on - strand, within H281DRAFT_02954 at 569.572 kb on + strand at 569.598 kb on + strand at 569.718 kb on + strand at 569.719 kb on - strand at 570.098 kb on - strand, within H281DRAFT_02955 at 570.906 kb on - strand, within H281DRAFT_02956 at 570.943 kb on + strand at 571.156 kb on - strand, within H281DRAFT_02957
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 568,894 - +0.8 568,920 - -0.1 568,943 - -0.3 569,145 + +0.6 569,251 + H281DRAFT_02954 0.23 -0.9 569,251 + H281DRAFT_02954 0.23 -0.3 569,252 - H281DRAFT_02954 0.23 +0.0 569,313 - H281DRAFT_02954 0.38 -0.4 569,313 - H281DRAFT_02954 0.38 +0.1 569,313 - H281DRAFT_02954 0.38 -0.5 569,432 - H281DRAFT_02954 0.67 -0.8 569,445 + H281DRAFT_02954 0.70 +0.7 569,445 + H281DRAFT_02954 0.70 -0.9 569,467 - H281DRAFT_02954 0.75 -0.5 569,481 - H281DRAFT_02954 0.79 +0.9 569,572 + -2.2 569,598 + +0.9 569,718 + -1.1 569,719 - -1.0 570,098 - H281DRAFT_02955 0.70 -0.2 570,906 - H281DRAFT_02956 0.86 -0.9 570,943 + -0.1 571,156 - H281DRAFT_02957 0.16 -0.5
Or see this region's nucleotide sequence