Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02888

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02887 and H281DRAFT_02888 are separated by 179 nucleotidesH281DRAFT_02888 and H281DRAFT_02889 are separated by 185 nucleotides H281DRAFT_02887: H281DRAFT_02887 - transcriptional regulator, LysR family, at 488,138 to 489,028 _02887 H281DRAFT_02888: H281DRAFT_02888 - hypothetical protein, at 489,208 to 489,933 _02888 H281DRAFT_02889: H281DRAFT_02889 - alkyl hydroperoxide reductase subunit F, at 490,119 to 491,711 _02889 Position (kb) 489 490Strain fitness (log2 ratio) -2 -1 0 1 2 3at 489.433 kb on - strand, within H281DRAFT_02888at 489.518 kb on - strand, within H281DRAFT_02888at 489.767 kb on - strand, within H281DRAFT_02888at 489.767 kb on - strand, within H281DRAFT_02888at 489.767 kb on - strand, within H281DRAFT_02888at 489.885 kb on - strandat 489.955 kb on - strandat 490.046 kb on + strandat 490.066 kb on + strandat 490.067 kb on - strandat 490.100 kb on + strandat 490.101 kb on - strandat 490.108 kb on - strandat 490.693 kb on + strand, within H281DRAFT_02889

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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489,433 - H281DRAFT_02888 0.31 +0.7
489,518 - H281DRAFT_02888 0.43 -0.4
489,767 - H281DRAFT_02888 0.77 +3.3
489,767 - H281DRAFT_02888 0.77 +0.2
489,767 - H281DRAFT_02888 0.77 +3.0
489,885 - -0.2
489,955 - -0.2
490,046 + -1.9
490,066 + -0.9
490,067 - -0.8
490,100 + +0.2
490,101 - -0.5
490,108 - -0.3
490,693 + H281DRAFT_02889 0.36 +0.6

Or see this region's nucleotide sequence