Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02795

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02794 and H281DRAFT_02795 are separated by 64 nucleotidesH281DRAFT_02795 and H281DRAFT_02796 are separated by 21 nucleotides H281DRAFT_02794: H281DRAFT_02794 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 381,322 to 382,533 _02794 H281DRAFT_02795: H281DRAFT_02795 - Predicted periplasmic or secreted lipoprotein, at 382,598 to 382,876 _02795 H281DRAFT_02796: H281DRAFT_02796 - acetate kinase, at 382,898 to 384,055 _02796 Position (kb) 382 383Strain fitness (log2 ratio) -1 0 1 2 3at 381.740 kb on - strand, within H281DRAFT_02794at 381.740 kb on - strand, within H281DRAFT_02794at 382.133 kb on - strand, within H281DRAFT_02794at 382.329 kb on - strand, within H281DRAFT_02794at 382.456 kb on + strandat 382.456 kb on + strandat 382.456 kb on + strandat 382.457 kb on - strandat 382.562 kb on + strandat 382.563 kb on - strandat 382.845 kb on + strand, within H281DRAFT_02795at 383.301 kb on + strand, within H281DRAFT_02796at 383.301 kb on + strand, within H281DRAFT_02796at 383.303 kb on + strand, within H281DRAFT_02796at 383.304 kb on - strand, within H281DRAFT_02796at 383.304 kb on - strand, within H281DRAFT_02796at 383.304 kb on - strand, within H281DRAFT_02796at 383.380 kb on + strand, within H281DRAFT_02796at 383.491 kb on - strand, within H281DRAFT_02796at 383.741 kb on + strand, within H281DRAFT_02796

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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381,740 - H281DRAFT_02794 0.34 -0.4
381,740 - H281DRAFT_02794 0.34 +0.8
382,133 - H281DRAFT_02794 0.67 -0.3
382,329 - H281DRAFT_02794 0.83 +0.2
382,456 + -0.2
382,456 + +0.0
382,456 + +0.3
382,457 - -1.1
382,562 + +0.0
382,563 - +3.4
382,845 + H281DRAFT_02795 0.89 -1.1
383,301 + H281DRAFT_02796 0.35 +0.2
383,301 + H281DRAFT_02796 0.35 +0.1
383,303 + H281DRAFT_02796 0.35 -0.3
383,304 - H281DRAFT_02796 0.35 +1.2
383,304 - H281DRAFT_02796 0.35 +0.4
383,304 - H281DRAFT_02796 0.35 +0.5
383,380 + H281DRAFT_02796 0.42 -0.7
383,491 - H281DRAFT_02796 0.51 +0.1
383,741 + H281DRAFT_02796 0.73 -0.8

Or see this region's nucleotide sequence