Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02627

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02626 and H281DRAFT_02627 are separated by 147 nucleotidesH281DRAFT_02627 and H281DRAFT_02628 are separated by 104 nucleotidesH281DRAFT_02628 and H281DRAFT_02629 are separated by 14 nucleotides H281DRAFT_02626: H281DRAFT_02626 - hypothetical protein, at 202,397 to 203,149 _02626 H281DRAFT_02627: H281DRAFT_02627 - transcriptional regulator, LacI family, at 203,297 to 204,301 _02627 H281DRAFT_02628: H281DRAFT_02628 - hypothetical protein, at 204,406 to 204,501 _02628 H281DRAFT_02629: H281DRAFT_02629 - carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-), at 204,516 to 205,661 _02629 Position (kb) 203 204 205Strain fitness (log2 ratio) -1 0 1at 202.306 kb on + strandat 202.307 kb on - strandat 202.649 kb on + strand, within H281DRAFT_02626at 202.650 kb on - strand, within H281DRAFT_02626at 203.127 kb on - strandat 204.376 kb on - strandat 204.622 kb on + strandat 204.622 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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202,306 + +0.5
202,307 - +0.2
202,649 + H281DRAFT_02626 0.33 -0.3
202,650 - H281DRAFT_02626 0.34 -0.5
203,127 - +0.1
204,376 - +0.4
204,622 + +0.7
204,622 + -0.5

Or see this region's nucleotide sequence