Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02601

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02600 and H281DRAFT_02601 are separated by 911 nucleotidesH281DRAFT_02601 and H281DRAFT_02602 are separated by 10 nucleotidesH281DRAFT_02602 and H281DRAFT_02603 are separated by 233 nucleotides H281DRAFT_02600: H281DRAFT_02600 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 174,846 to 175,448 _02600 H281DRAFT_02601: H281DRAFT_02601 - two-component system, OmpR family, sensor histidine kinase TctE, at 176,360 to 177,730 _02601 H281DRAFT_02602: H281DRAFT_02602 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 177,741 to 178,415 _02602 H281DRAFT_02603: H281DRAFT_02603 - Outer membrane protein (porin), at 178,649 to 179,776 _02603 Position (kb) 176 177 178Strain fitness (log2 ratio) -1 0 1at 175.661 kb on + strandat 175.662 kb on - strandat 175.842 kb on - strandat 177.873 kb on + strand, within H281DRAFT_02602at 178.309 kb on + strand, within H281DRAFT_02602at 178.661 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
175,661 + -0.8
175,662 - +0.1
175,842 - -0.1
177,873 + H281DRAFT_02602 0.20 -0.4
178,309 + H281DRAFT_02602 0.84 -0.1
178,661 + -0.9

Or see this region's nucleotide sequence