Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02433

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02431 and H281DRAFT_02432 are separated by 74 nucleotidesH281DRAFT_02432 and H281DRAFT_02433 are separated by 90 nucleotidesH281DRAFT_02433 and H281DRAFT_02434 are separated by 45 nucleotides H281DRAFT_02431: H281DRAFT_02431 - transketolase subunit B, at 602,772 to 603,752 _02431 H281DRAFT_02432: H281DRAFT_02432 - hypothetical protein, at 603,827 to 604,561 _02432 H281DRAFT_02433: H281DRAFT_02433 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 604,652 to 605,797 _02433 H281DRAFT_02434: H281DRAFT_02434 - Predicted O-linked N-acetylglucosamine transferase, SPINDLY family, at 605,843 to 608,317 _02434 Position (kb) 604 605 606Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 603.672 kb on + strandat 603.673 kb on - strandat 603.771 kb on + strandat 603.771 kb on + strandat 603.772 kb on - strandat 603.772 kb on - strandat 603.772 kb on - strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.773 kb on + strandat 603.774 kb on - strandat 603.774 kb on - strandat 603.774 kb on - strandat 603.826 kb on + strandat 603.826 kb on + strandat 603.827 kb on - strandat 603.827 kb on - strandat 603.898 kb on - strandat 603.938 kb on - strand, within H281DRAFT_02432at 603.949 kb on + strand, within H281DRAFT_02432at 604.188 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.216 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.329 kb on - strand, within H281DRAFT_02432at 604.575 kb on + strandat 604.588 kb on + strandat 604.589 kb on - strandat 604.591 kb on - strandat 604.653 kb on + strandat 604.791 kb on + strandat 604.792 kb on - strand, within H281DRAFT_02433at 604.819 kb on - strand, within H281DRAFT_02433at 604.887 kb on + strand, within H281DRAFT_02433at 604.888 kb on - strand, within H281DRAFT_02433at 604.915 kb on - strand, within H281DRAFT_02433at 604.933 kb on + strand, within H281DRAFT_02433at 604.989 kb on + strand, within H281DRAFT_02433at 604.990 kb on - strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.298 kb on + strand, within H281DRAFT_02433at 605.316 kb on + strand, within H281DRAFT_02433at 605.317 kb on - strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.616 kb on + strand, within H281DRAFT_02433at 605.617 kb on - strand, within H281DRAFT_02433at 605.742 kb on + strandat 605.742 kb on + strandat 605.743 kb on - strandat 605.797 kb on + strandat 605.798 kb on - strandat 605.894 kb on - strandat 605.894 kb on - strandat 606.316 kb on + strand, within H281DRAFT_02434at 606.316 kb on + strand, within H281DRAFT_02434at 606.317 kb on - strand, within H281DRAFT_02434at 606.352 kb on + strand, within H281DRAFT_02434at 606.353 kb on - strand, within H281DRAFT_02434at 606.354 kb on + strand, within H281DRAFT_02434at 606.429 kb on + strand, within H281DRAFT_02434at 606.429 kb on + strand, within H281DRAFT_02434at 606.430 kb on - strand, within H281DRAFT_02434at 606.430 kb on - strand, within H281DRAFT_02434at 606.559 kb on - strand, within H281DRAFT_02434at 606.568 kb on - strand, within H281DRAFT_02434at 606.568 kb on - strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.623 kb on - strand, within H281DRAFT_02434at 606.624 kb on + strand, within H281DRAFT_02434at 606.624 kb on + strand, within H281DRAFT_02434at 606.624 kb on + strand, within H281DRAFT_02434at 606.625 kb on - strand, within H281DRAFT_02434at 606.625 kb on - strand, within H281DRAFT_02434at 606.625 kb on - strand, within H281DRAFT_02434at 606.711 kb on + strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.715 kb on - strand, within H281DRAFT_02434at 606.715 kb on - strand, within H281DRAFT_02434

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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603,672 + -0.0
603,673 - -0.0
603,771 + +0.0
603,771 + -0.0
603,772 - -0.3
603,772 - +0.0
603,772 - +0.2
603,773 + -0.4
603,773 + -1.1
603,773 + +1.2
603,773 + -1.7
603,773 + +1.5
603,773 + +1.7
603,774 - +0.1
603,774 - +1.6
603,774 - -0.0
603,826 + -0.3
603,826 + -0.4
603,827 - -0.1
603,827 - +0.3
603,898 - +2.6
603,938 - H281DRAFT_02432 0.15 -0.0
603,949 + H281DRAFT_02432 0.17 +0.1
604,188 - H281DRAFT_02432 0.49 +0.6
604,216 - H281DRAFT_02432 0.53 -0.2
604,216 - H281DRAFT_02432 0.53 -0.1
604,216 - H281DRAFT_02432 0.53 +1.6
604,216 - H281DRAFT_02432 0.53 -0.8
604,329 - H281DRAFT_02432 0.68 +1.0
604,329 - H281DRAFT_02432 0.68 +1.3
604,329 - H281DRAFT_02432 0.68 +0.0
604,329 - H281DRAFT_02432 0.68 +0.6
604,329 - H281DRAFT_02432 0.68 +3.1
604,575 + +0.3
604,588 + +0.3
604,589 - -2.9
604,591 - -0.1
604,653 + +0.3
604,791 + +1.1
604,792 - H281DRAFT_02433 0.12 -0.7
604,819 - H281DRAFT_02433 0.15 +0.6
604,887 + H281DRAFT_02433 0.21 -0.7
604,888 - H281DRAFT_02433 0.21 -3.0
604,915 - H281DRAFT_02433 0.23 +0.1
604,933 + H281DRAFT_02433 0.25 -0.7
604,989 + H281DRAFT_02433 0.29 -1.1
604,990 - H281DRAFT_02433 0.29 -0.7
605,032 + H281DRAFT_02433 0.33 -0.0
605,032 + H281DRAFT_02433 0.33 -0.2
605,032 + H281DRAFT_02433 0.33 -2.3
605,298 + H281DRAFT_02433 0.56 -0.2
605,316 + H281DRAFT_02433 0.58 -0.2
605,317 - H281DRAFT_02433 0.58 +0.3
605,364 + H281DRAFT_02433 0.62 +1.5
605,364 + H281DRAFT_02433 0.62 -0.7
605,364 + H281DRAFT_02433 0.62 -1.0
605,364 + H281DRAFT_02433 0.62 -0.9
605,365 - H281DRAFT_02433 0.62 -0.2
605,365 - H281DRAFT_02433 0.62 +0.4
605,365 - H281DRAFT_02433 0.62 -0.6
605,616 + H281DRAFT_02433 0.84 +0.1
605,617 - H281DRAFT_02433 0.84 -0.9
605,742 + -0.8
605,742 + -0.3
605,743 - +0.5
605,797 + -0.5
605,798 - -0.3
605,894 - -0.2
605,894 - +0.4
606,316 + H281DRAFT_02434 0.19 +0.1
606,316 + H281DRAFT_02434 0.19 -0.7
606,317 - H281DRAFT_02434 0.19 +0.4
606,352 + H281DRAFT_02434 0.21 -0.4
606,353 - H281DRAFT_02434 0.21 -0.1
606,354 + H281DRAFT_02434 0.21 -0.2
606,429 + H281DRAFT_02434 0.24 +0.4
606,429 + H281DRAFT_02434 0.24 +0.7
606,430 - H281DRAFT_02434 0.24 -0.7
606,430 - H281DRAFT_02434 0.24 +0.5
606,559 - H281DRAFT_02434 0.29 -0.6
606,568 - H281DRAFT_02434 0.29 -1.5
606,568 - H281DRAFT_02434 0.29 -0.6
606,622 + H281DRAFT_02434 0.31 +0.2
606,622 + H281DRAFT_02434 0.31 -0.2
606,622 + H281DRAFT_02434 0.31 +0.3
606,622 + H281DRAFT_02434 0.31 +0.6
606,623 - H281DRAFT_02434 0.32 -0.4
606,624 + H281DRAFT_02434 0.32 -0.3
606,624 + H281DRAFT_02434 0.32 -1.2
606,624 + H281DRAFT_02434 0.32 -0.2
606,625 - H281DRAFT_02434 0.32 -0.5
606,625 - H281DRAFT_02434 0.32 +0.6
606,625 - H281DRAFT_02434 0.32 +0.9
606,711 + H281DRAFT_02434 0.35 -0.4
606,712 - H281DRAFT_02434 0.35 -1.7
606,712 - H281DRAFT_02434 0.35 -1.0
606,712 - H281DRAFT_02434 0.35 -0.7
606,712 - H281DRAFT_02434 0.35 +0.7
606,715 - H281DRAFT_02434 0.35 +0.1
606,715 - H281DRAFT_02434 0.35 +0.4

Or see this region's nucleotide sequence