Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02275

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02274 and H281DRAFT_02275 overlap by 23 nucleotidesH281DRAFT_02275 and H281DRAFT_02276 overlap by 4 nucleotides H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882 _02274 H281DRAFT_02275: H281DRAFT_02275 - chromosome partitioning protein, ParB family, at 420,860 to 421,774 _02275 H281DRAFT_02276: H281DRAFT_02276 - ParB-like nuclease domain-containing protein, at 421,771 to 422,670 _02276 Position (kb) 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.866 kb on - strand, within H281DRAFT_02274at 419.954 kb on + strand, within H281DRAFT_02274at 419.964 kb on - strand, within H281DRAFT_02274at 419.965 kb on + strand, within H281DRAFT_02274at 419.965 kb on + strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 420.083 kb on + strand, within H281DRAFT_02274at 420.084 kb on - strand, within H281DRAFT_02274at 420.084 kb on - strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strandat 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.098 kb on - strand, within H281DRAFT_02274at 420.098 kb on - strand, within H281DRAFT_02274at 420.264 kb on + strand, within H281DRAFT_02274at 420.265 kb on - strand, within H281DRAFT_02274at 420.265 kb on - strand, within H281DRAFT_02274at 420.299 kb on + strand, within H281DRAFT_02274at 420.299 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.403 kb on + strand, within H281DRAFT_02274at 420.404 kb on - strand, within H281DRAFT_02274at 420.418 kb on + strand, within H281DRAFT_02274at 420.418 kb on + strand, within H281DRAFT_02274at 420.443 kb on - strand, within H281DRAFT_02274at 420.443 kb on - strand, within H281DRAFT_02274at 420.443 kb on - strand, within H281DRAFT_02274at 420.577 kb on - strand, within H281DRAFT_02274at 420.648 kb on + strandat 420.715 kb on + strand, within H281DRAFT_02274at 420.715 kb on + strand, within H281DRAFT_02274at 420.719 kb on - strand, within H281DRAFT_02274at 420.769 kb on + strandat 420.769 kb on + strandat 420.877 kb on - strandat 421.132 kb on + strand, within H281DRAFT_02275at 421.133 kb on - strand, within H281DRAFT_02275at 421.201 kb on + strand, within H281DRAFT_02275at 421.250 kb on + strand, within H281DRAFT_02275at 421.252 kb on + strand, within H281DRAFT_02275at 421.253 kb on - strand, within H281DRAFT_02275at 421.253 kb on - strand, within H281DRAFT_02275at 421.253 kb on - strand, within H281DRAFT_02275at 421.295 kb on + strand, within H281DRAFT_02275at 421.296 kb on - strand, within H281DRAFT_02275at 421.296 kb on - strand, within H281DRAFT_02275at 421.296 kb on - strand, within H281DRAFT_02275at 421.297 kb on + strand, within H281DRAFT_02275at 421.364 kb on - strand, within H281DRAFT_02275at 421.368 kb on + strand, within H281DRAFT_02275at 421.440 kb on - strand, within H281DRAFT_02275at 421.496 kb on - strand, within H281DRAFT_02275at 421.520 kb on + strand, within H281DRAFT_02275at 421.521 kb on - strand, within H281DRAFT_02275at 421.521 kb on - strand, within H281DRAFT_02275at 421.740 kb on + strandat 421.750 kb on + strandat 421.751 kb on - strandat 421.914 kb on - strand, within H281DRAFT_02276at 422.271 kb on - strand, within H281DRAFT_02276at 422.347 kb on + strand, within H281DRAFT_02276at 422.347 kb on + strand, within H281DRAFT_02276at 422.348 kb on - strandat 422.348 kb on - strand, within H281DRAFT_02276at 422.500 kb on - strand, within H281DRAFT_02276at 422.647 kb on - strandat 422.668 kb on + strandat 422.712 kb on + strandat 422.713 kb on - strandat 422.713 kb on - strandat 422.770 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
419,866 - H281DRAFT_02274 0.33 +0.2
419,954 + H281DRAFT_02274 0.39 +0.7
419,964 - H281DRAFT_02274 0.39 -0.7
419,965 + H281DRAFT_02274 0.39 -1.2
419,965 + H281DRAFT_02274 0.39 +2.4
419,966 - H281DRAFT_02274 0.39 -0.2
419,966 - H281DRAFT_02274 0.39 +0.5
419,966 - H281DRAFT_02274 0.39 -0.1
419,966 - H281DRAFT_02274 0.39 -2.2
420,083 + H281DRAFT_02274 0.47 -2.9
420,084 - H281DRAFT_02274 0.47 +0.3
420,084 - H281DRAFT_02274 0.47 +0.3
420,097 + H281DRAFT_02274 0.48 +0.7
420,097 + +0.1
420,097 + H281DRAFT_02274 0.48 +0.3
420,097 + H281DRAFT_02274 0.48 +0.6
420,097 + H281DRAFT_02274 0.48 -0.7
420,097 + H281DRAFT_02274 0.48 -0.5
420,098 - H281DRAFT_02274 0.48 -0.2
420,098 - H281DRAFT_02274 0.48 -0.5
420,264 + H281DRAFT_02274 0.59 +1.3
420,265 - H281DRAFT_02274 0.59 +0.1
420,265 - H281DRAFT_02274 0.59 +1.9
420,299 + H281DRAFT_02274 0.61 -0.1
420,299 + H281DRAFT_02274 0.61 +0.2
420,403 + H281DRAFT_02274 0.68 +0.8
420,403 + H281DRAFT_02274 0.68 -0.5
420,403 + H281DRAFT_02274 0.68 -0.2
420,403 + H281DRAFT_02274 0.68 -1.0
420,404 - H281DRAFT_02274 0.68 -0.9
420,418 + H281DRAFT_02274 0.69 +0.1
420,418 + H281DRAFT_02274 0.69 +0.5
420,443 - H281DRAFT_02274 0.71 -0.3
420,443 - H281DRAFT_02274 0.71 +0.2
420,443 - H281DRAFT_02274 0.71 +0.1
420,577 - H281DRAFT_02274 0.80 +0.5
420,648 + +2.5
420,715 + H281DRAFT_02274 0.89 +1.7
420,715 + H281DRAFT_02274 0.89 +0.8
420,719 - H281DRAFT_02274 0.89 +0.9
420,769 + -0.2
420,769 + -0.0
420,877 - +0.8
421,132 + H281DRAFT_02275 0.30 -0.4
421,133 - H281DRAFT_02275 0.30 -0.0
421,201 + H281DRAFT_02275 0.37 -3.2
421,250 + H281DRAFT_02275 0.43 +0.4
421,252 + H281DRAFT_02275 0.43 +0.5
421,253 - H281DRAFT_02275 0.43 +0.9
421,253 - H281DRAFT_02275 0.43 -0.5
421,253 - H281DRAFT_02275 0.43 +0.9
421,295 + H281DRAFT_02275 0.48 +0.7
421,296 - H281DRAFT_02275 0.48 -0.3
421,296 - H281DRAFT_02275 0.48 +0.1
421,296 - H281DRAFT_02275 0.48 +0.1
421,297 + H281DRAFT_02275 0.48 +0.4
421,364 - H281DRAFT_02275 0.55 +1.4
421,368 + H281DRAFT_02275 0.56 +0.6
421,440 - H281DRAFT_02275 0.63 +0.0
421,496 - H281DRAFT_02275 0.70 -0.7
421,520 + H281DRAFT_02275 0.72 +0.1
421,521 - H281DRAFT_02275 0.72 +0.3
421,521 - H281DRAFT_02275 0.72 -2.9
421,740 + +0.4
421,750 + +0.4
421,751 - +0.5
421,914 - H281DRAFT_02276 0.16 +0.5
422,271 - H281DRAFT_02276 0.56 -0.4
422,347 + H281DRAFT_02276 0.64 -0.2
422,347 + H281DRAFT_02276 0.64 -0.9
422,348 - +0.1
422,348 - H281DRAFT_02276 0.64 +1.1
422,500 - H281DRAFT_02276 0.81 +0.0
422,647 - -0.1
422,668 + +0.1
422,712 + -1.1
422,713 - +0.1
422,713 - +1.7
422,770 + +0.5

Or see this region's nucleotide sequence