Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02216

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02214 and H281DRAFT_02215 overlap by 4 nucleotidesH281DRAFT_02215 and H281DRAFT_02216 are separated by 14 nucleotidesH281DRAFT_02216 and H281DRAFT_02217 overlap by 4 nucleotides H281DRAFT_02214: H281DRAFT_02214 - homoserine O-acetyltransferase, at 356,911 to 358,056 _02214 H281DRAFT_02215: H281DRAFT_02215 - methionine biosynthesis protein MetW, at 358,053 to 358,661 _02215 H281DRAFT_02216: H281DRAFT_02216 - MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG, at 358,676 to 360,070 _02216 H281DRAFT_02217: H281DRAFT_02217 - Peptidase family M48, at 360,067 to 361,350 _02217 Position (kb) 358 359 360 361Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 357.704 kb on - strand, within H281DRAFT_02214at 357.704 kb on - strandat 357.704 kb on - strand, within H281DRAFT_02214at 357.737 kb on - strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.754 kb on + strand, within H281DRAFT_02214at 357.755 kb on - strand, within H281DRAFT_02214at 357.755 kb on - strand, within H281DRAFT_02214at 357.755 kb on - strand, within H281DRAFT_02214at 357.758 kb on + strand, within H281DRAFT_02214at 357.758 kb on + strand, within H281DRAFT_02214at 357.758 kb on + strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.759 kb on - strand, within H281DRAFT_02214at 357.781 kb on + strand, within H281DRAFT_02214at 357.781 kb on + strand, within H281DRAFT_02214at 357.782 kb on - strand, within H281DRAFT_02214at 357.834 kb on + strand, within H281DRAFT_02214at 357.835 kb on - strand, within H281DRAFT_02214at 357.835 kb on - strand, within H281DRAFT_02214at 357.848 kb on - strand, within H281DRAFT_02214at 357.944 kb on - strandat 358.022 kb on - strandat 358.025 kb on - strandat 358.074 kb on + strandat 358.074 kb on + strandat 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.400 kb on + strand, within H281DRAFT_02215at 358.401 kb on - strand, within H281DRAFT_02215at 358.486 kb on - strand, within H281DRAFT_02215at 358.628 kb on + strandat 358.628 kb on + strandat 358.629 kb on - strandat 358.629 kb on - strandat 358.641 kb on + strandat 358.642 kb on - strandat 358.659 kb on + strandat 358.660 kb on - strandat 358.708 kb on + strandat 358.708 kb on + strandat 358.709 kb on - strandat 358.750 kb on + strandat 358.751 kb on - strandat 358.783 kb on + strandat 358.783 kb on + strandat 358.815 kb on - strandat 358.815 kb on - strandat 358.815 kb on - strandat 358.815 kb on - strandat 358.893 kb on - strand, within H281DRAFT_02216at 358.893 kb on - strand, within H281DRAFT_02216at 358.932 kb on - strand, within H281DRAFT_02216at 359.183 kb on + strand, within H281DRAFT_02216at 359.183 kb on + strand, within H281DRAFT_02216at 359.183 kb on + strandat 359.184 kb on - strand, within H281DRAFT_02216at 359.199 kb on + strand, within H281DRAFT_02216at 359.199 kb on + strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.200 kb on - strand, within H281DRAFT_02216at 359.202 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.699 kb on + strand, within H281DRAFT_02216at 359.700 kb on - strand, within H281DRAFT_02216at 359.827 kb on + strand, within H281DRAFT_02216at 359.827 kb on + strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.859 kb on - strand, within H281DRAFT_02216at 359.886 kb on - strand, within H281DRAFT_02216at 359.991 kb on - strandat 360.121 kb on + strandat 360.205 kb on + strand, within H281DRAFT_02217at 360.206 kb on - strand, within H281DRAFT_02217at 360.532 kb on + strand, within H281DRAFT_02217at 360.565 kb on + strand, within H281DRAFT_02217at 360.579 kb on + strand, within H281DRAFT_02217at 360.579 kb on + strand, within H281DRAFT_02217at 360.640 kb on + strand, within H281DRAFT_02217at 360.667 kb on + strand, within H281DRAFT_02217at 360.727 kb on + strand, within H281DRAFT_02217at 360.801 kb on + strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.802 kb on - strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.805 kb on + strand, within H281DRAFT_02217at 360.806 kb on - strand, within H281DRAFT_02217at 360.806 kb on - strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.835 kb on + strand, within H281DRAFT_02217at 360.836 kb on - strand, within H281DRAFT_02217at 360.836 kb on - strand, within H281DRAFT_02217at 360.989 kb on + strand, within H281DRAFT_02217at 360.989 kb on + strand, within H281DRAFT_02217at 360.990 kb on - strand, within H281DRAFT_02217at 361.054 kb on + strand, within H281DRAFT_02217

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
357,704 - H281DRAFT_02214 0.69 -5.2
357,704 - +1.1
357,704 - H281DRAFT_02214 0.69 -4.0
357,737 - H281DRAFT_02214 0.72 -4.5
357,754 + H281DRAFT_02214 0.74 -3.6
357,754 + H281DRAFT_02214 0.74 -2.6
357,754 + H281DRAFT_02214 0.74 -5.2
357,754 + H281DRAFT_02214 0.74 -3.9
357,754 + H281DRAFT_02214 0.74 -4.8
357,754 + H281DRAFT_02214 0.74 -3.9
357,755 - H281DRAFT_02214 0.74 -4.7
357,755 - H281DRAFT_02214 0.74 -2.9
357,755 - H281DRAFT_02214 0.74 -3.3
357,758 + H281DRAFT_02214 0.74 -3.1
357,758 + H281DRAFT_02214 0.74 -3.8
357,758 + H281DRAFT_02214 0.74 -3.7
357,759 - H281DRAFT_02214 0.74 -3.8
357,759 - H281DRAFT_02214 0.74 -4.3
357,759 - H281DRAFT_02214 0.74 -5.1
357,759 - H281DRAFT_02214 0.74 -4.9
357,759 - H281DRAFT_02214 0.74 -4.4
357,759 - H281DRAFT_02214 0.74 -2.7
357,781 + H281DRAFT_02214 0.76 -4.1
357,781 + H281DRAFT_02214 0.76 -5.0
357,782 - H281DRAFT_02214 0.76 -0.9
357,834 + H281DRAFT_02214 0.81 -4.0
357,835 - H281DRAFT_02214 0.81 -3.2
357,835 - H281DRAFT_02214 0.81 -3.5
357,848 - H281DRAFT_02214 0.82 -2.3
357,944 - -5.7
358,022 - -5.5
358,025 - +0.1
358,074 + -3.8
358,074 + -1.6
358,400 + H281DRAFT_02215 0.57 -1.7
358,400 + H281DRAFT_02215 0.57 -5.0
358,400 + H281DRAFT_02215 0.57 -1.9
358,400 + H281DRAFT_02215 0.57 -4.7
358,400 + H281DRAFT_02215 0.57 -3.7
358,401 - H281DRAFT_02215 0.57 -2.9
358,486 - H281DRAFT_02215 0.71 -3.5
358,628 + -5.4
358,628 + -2.6
358,629 - -2.3
358,629 - -1.5
358,641 + -4.7
358,642 - -4.7
358,659 + +0.4
358,660 - -0.3
358,708 + -0.6
358,708 + -0.3
358,709 - +0.1
358,750 + -0.1
358,751 - -1.9
358,783 + +1.3
358,783 + -0.7
358,815 - +0.8
358,815 - +0.0
358,815 - +0.1
358,815 - -0.5
358,893 - H281DRAFT_02216 0.16 +0.4
358,893 - H281DRAFT_02216 0.16 -2.7
358,932 - H281DRAFT_02216 0.18 -3.1
359,183 + H281DRAFT_02216 0.36 -0.3
359,183 + H281DRAFT_02216 0.36 -0.6
359,183 + +0.4
359,184 - H281DRAFT_02216 0.36 +0.6
359,199 + H281DRAFT_02216 0.37 +2.1
359,199 + H281DRAFT_02216 0.37 -0.5
359,200 - H281DRAFT_02216 0.38 -0.0
359,200 - H281DRAFT_02216 0.38 -0.4
359,200 - H281DRAFT_02216 0.38 +0.1
359,202 + H281DRAFT_02216 0.38 -0.2
359,699 + H281DRAFT_02216 0.73 +0.7
359,699 + H281DRAFT_02216 0.73 -0.4
359,699 + H281DRAFT_02216 0.73 -0.2
359,699 + H281DRAFT_02216 0.73 -0.2
359,700 - H281DRAFT_02216 0.73 -0.0
359,827 + H281DRAFT_02216 0.83 +0.8
359,827 + H281DRAFT_02216 0.83 -3.5
359,859 - H281DRAFT_02216 0.85 -0.2
359,859 - H281DRAFT_02216 0.85 +0.3
359,859 - H281DRAFT_02216 0.85 +0.7
359,859 - H281DRAFT_02216 0.85 -3.3
359,886 - H281DRAFT_02216 0.87 -1.2
359,991 - -0.5
360,121 + -1.0
360,205 + H281DRAFT_02217 0.11 +0.1
360,206 - H281DRAFT_02217 0.11 +0.2
360,532 + H281DRAFT_02217 0.36 +0.2
360,565 + H281DRAFT_02217 0.39 -0.7
360,579 + H281DRAFT_02217 0.40 +0.9
360,579 + H281DRAFT_02217 0.40 -0.2
360,640 + H281DRAFT_02217 0.45 -0.0
360,667 + H281DRAFT_02217 0.47 +0.6
360,727 + H281DRAFT_02217 0.51 -1.0
360,801 + H281DRAFT_02217 0.57 +2.7
360,802 - H281DRAFT_02217 0.57 -0.6
360,802 - H281DRAFT_02217 0.57 +3.6
360,802 - H281DRAFT_02217 0.57 +0.0
360,802 - H281DRAFT_02217 0.57 -0.0
360,805 + H281DRAFT_02217 0.57 -0.0
360,805 + H281DRAFT_02217 0.57 -0.3
360,805 + H281DRAFT_02217 0.57 -0.7
360,805 + H281DRAFT_02217 0.57 +1.4
360,806 - H281DRAFT_02217 0.58 +0.0
360,806 - H281DRAFT_02217 0.58 +1.0
360,835 + H281DRAFT_02217 0.60 +0.6
360,835 + H281DRAFT_02217 0.60 -0.8
360,835 + H281DRAFT_02217 0.60 -0.1
360,835 + H281DRAFT_02217 0.60 +2.5
360,836 - H281DRAFT_02217 0.60 +0.1
360,836 - H281DRAFT_02217 0.60 -0.1
360,989 + H281DRAFT_02217 0.72 -1.1
360,989 + H281DRAFT_02217 0.72 -0.9
360,990 - H281DRAFT_02217 0.72 +0.2
361,054 + H281DRAFT_02217 0.77 +0.1

Or see this region's nucleotide sequence