Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02053

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02051 and H281DRAFT_02052 are separated by 9 nucleotidesH281DRAFT_02052 and H281DRAFT_02053 overlap by 29 nucleotidesH281DRAFT_02053 and H281DRAFT_02054 are separated by 12 nucleotides H281DRAFT_02051: H281DRAFT_02051 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 174,695 to 175,672 _02051 H281DRAFT_02052: H281DRAFT_02052 - hypothetical protein, at 175,682 to 175,951 _02052 H281DRAFT_02053: H281DRAFT_02053 - D-alanine transaminase, at 175,923 to 176,873 _02053 H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115 _02054 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2 3at 174.927 kb on + strand, within H281DRAFT_02051at 175.125 kb on + strand, within H281DRAFT_02051at 175.126 kb on - strand, within H281DRAFT_02051at 175.126 kb on - strand, within H281DRAFT_02051at 175.126 kb on - strand, within H281DRAFT_02051at 175.126 kb on - strand, within H281DRAFT_02051at 175.126 kb on - strand, within H281DRAFT_02051at 175.126 kb on - strand, within H281DRAFT_02051at 175.151 kb on + strand, within H281DRAFT_02051at 175.287 kb on + strand, within H281DRAFT_02051at 175.287 kb on + strand, within H281DRAFT_02051at 175.352 kb on + strand, within H281DRAFT_02051at 175.352 kb on + strand, within H281DRAFT_02051at 175.353 kb on - strand, within H281DRAFT_02051at 175.353 kb on - strand, within H281DRAFT_02051at 175.353 kb on - strand, within H281DRAFT_02051at 175.493 kb on + strand, within H281DRAFT_02051at 175.493 kb on + strand, within H281DRAFT_02051at 175.494 kb on - strand, within H281DRAFT_02051at 175.494 kb on - strand, within H281DRAFT_02051at 175.496 kb on + strand, within H281DRAFT_02051at 175.496 kb on + strand, within H281DRAFT_02051at 175.497 kb on - strand, within H281DRAFT_02051at 175.497 kb on - strand, within H281DRAFT_02051at 175.782 kb on + strand, within H281DRAFT_02052at 175.920 kb on + strand, within H281DRAFT_02052at 175.928 kb on + strandat 175.929 kb on - strandat 175.996 kb on + strandat 175.997 kb on - strandat 175.997 kb on - strandat 175.997 kb on - strandat 176.005 kb on + strandat 176.006 kb on - strandat 176.241 kb on + strand, within H281DRAFT_02053at 176.241 kb on + strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.242 kb on - strand, within H281DRAFT_02053at 176.339 kb on - strand, within H281DRAFT_02053at 176.339 kb on - strand, within H281DRAFT_02053at 176.548 kb on + strand, within H281DRAFT_02053at 176.549 kb on - strand, within H281DRAFT_02053at 176.734 kb on + strand, within H281DRAFT_02053at 176.735 kb on - strand, within H281DRAFT_02053at 176.736 kb on + strand, within H281DRAFT_02053at 176.737 kb on - strand, within H281DRAFT_02053at 176.752 kb on + strand, within H281DRAFT_02053at 176.753 kb on - strand, within H281DRAFT_02053at 176.834 kb on - strandat 177.115 kb on + strandat 177.115 kb on + strand, within H281DRAFT_02054at 177.116 kb on - strand, within H281DRAFT_02054at 177.116 kb on - strand, within H281DRAFT_02054at 177.199 kb on + strand, within H281DRAFT_02054at 177.200 kb on - strand, within H281DRAFT_02054at 177.200 kb on - strand, within H281DRAFT_02054at 177.227 kb on - strand, within H281DRAFT_02054at 177.232 kb on + strand, within H281DRAFT_02054at 177.232 kb on + strand, within H281DRAFT_02054at 177.232 kb on + strand, within H281DRAFT_02054at 177.233 kb on - strand, within H281DRAFT_02054at 177.233 kb on - strand, within H281DRAFT_02054at 177.233 kb on - strand, within H281DRAFT_02054at 177.454 kb on + strand, within H281DRAFT_02054at 177.454 kb on + strand, within H281DRAFT_02054at 177.455 kb on - strand, within H281DRAFT_02054at 177.455 kb on - strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.485 kb on - strand, within H281DRAFT_02054at 177.485 kb on - strand, within H281DRAFT_02054at 177.487 kb on + strand, within H281DRAFT_02054at 177.547 kb on + strand, within H281DRAFT_02054at 177.547 kb on + strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.712 kb on + strand, within H281DRAFT_02054at 177.856 kb on + strand, within H281DRAFT_02054at 177.856 kb on + strand, within H281DRAFT_02054

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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174,927 + H281DRAFT_02051 0.24 +0.1
175,125 + H281DRAFT_02051 0.44 -0.1
175,126 - H281DRAFT_02051 0.44 +0.5
175,126 - H281DRAFT_02051 0.44 -0.2
175,126 - H281DRAFT_02051 0.44 +0.7
175,126 - H281DRAFT_02051 0.44 -0.3
175,126 - H281DRAFT_02051 0.44 +0.7
175,126 - H281DRAFT_02051 0.44 +0.1
175,151 + H281DRAFT_02051 0.47 +0.6
175,287 + H281DRAFT_02051 0.61 +0.4
175,287 + H281DRAFT_02051 0.61 +0.8
175,352 + H281DRAFT_02051 0.67 +0.4
175,352 + H281DRAFT_02051 0.67 -1.5
175,353 - H281DRAFT_02051 0.67 +0.1
175,353 - H281DRAFT_02051 0.67 -0.9
175,353 - H281DRAFT_02051 0.67 -0.1
175,493 + H281DRAFT_02051 0.82 +0.8
175,493 + H281DRAFT_02051 0.82 -0.8
175,494 - H281DRAFT_02051 0.82 +0.4
175,494 - H281DRAFT_02051 0.82 -0.4
175,496 + H281DRAFT_02051 0.82 -0.6
175,496 + H281DRAFT_02051 0.82 -0.3
175,497 - H281DRAFT_02051 0.82 -0.2
175,497 - H281DRAFT_02051 0.82 +0.8
175,782 + H281DRAFT_02052 0.37 +1.6
175,920 + H281DRAFT_02052 0.88 +1.4
175,928 + +1.1
175,929 - -0.3
175,996 + -0.7
175,997 - -0.1
175,997 - -1.8
175,997 - +0.7
176,005 + +1.1
176,006 - -0.5
176,241 + H281DRAFT_02053 0.33 +0.1
176,241 + H281DRAFT_02053 0.33 -1.5
176,242 - H281DRAFT_02053 0.34 +1.1
176,242 - H281DRAFT_02053 0.34 +0.3
176,242 - H281DRAFT_02053 0.34 +0.6
176,242 - H281DRAFT_02053 0.34 -0.2
176,339 - H281DRAFT_02053 0.44 -1.9
176,339 - H281DRAFT_02053 0.44 -0.5
176,548 + H281DRAFT_02053 0.66 -0.4
176,549 - H281DRAFT_02053 0.66 +0.1
176,734 + H281DRAFT_02053 0.85 +1.3
176,735 - H281DRAFT_02053 0.85 -0.1
176,736 + H281DRAFT_02053 0.85 -0.0
176,737 - H281DRAFT_02053 0.86 -0.2
176,752 + H281DRAFT_02053 0.87 +0.3
176,753 - H281DRAFT_02053 0.87 -0.2
176,834 - -0.0
177,115 + +3.4
177,115 + H281DRAFT_02054 0.19 +0.7
177,116 - H281DRAFT_02054 0.19 +1.7
177,116 - H281DRAFT_02054 0.19 +1.8
177,199 + H281DRAFT_02054 0.25 +1.3
177,200 - H281DRAFT_02054 0.26 +1.3
177,200 - H281DRAFT_02054 0.26 +0.1
177,227 - H281DRAFT_02054 0.28 +0.3
177,232 + H281DRAFT_02054 0.28 +1.7
177,232 + H281DRAFT_02054 0.28 -0.3
177,232 + H281DRAFT_02054 0.28 +0.6
177,233 - H281DRAFT_02054 0.28 +0.6
177,233 - H281DRAFT_02054 0.28 +0.7
177,233 - H281DRAFT_02054 0.28 +0.8
177,454 + H281DRAFT_02054 0.46 -0.8
177,454 + H281DRAFT_02054 0.46 +0.9
177,455 - H281DRAFT_02054 0.46 +0.5
177,455 - H281DRAFT_02054 0.46 -0.4
177,484 + H281DRAFT_02054 0.49 +1.0
177,484 + H281DRAFT_02054 0.49 -2.0
177,484 + H281DRAFT_02054 0.49 -0.6
177,485 - H281DRAFT_02054 0.49 -2.4
177,485 - H281DRAFT_02054 0.49 -0.9
177,487 + H281DRAFT_02054 0.49 +0.3
177,547 + H281DRAFT_02054 0.54 +2.6
177,547 + H281DRAFT_02054 0.54 +1.8
177,548 - H281DRAFT_02054 0.54 +0.4
177,548 - H281DRAFT_02054 0.54 +1.2
177,548 - H281DRAFT_02054 0.54 -2.3
177,712 + H281DRAFT_02054 0.67 +0.1
177,856 + H281DRAFT_02054 0.79 +0.1
177,856 + H281DRAFT_02054 0.79 +1.0

Or see this region's nucleotide sequence