Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01956

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01954 and H281DRAFT_01955 are separated by 137 nucleotidesH281DRAFT_01955 and H281DRAFT_01956 are separated by 94 nucleotidesH281DRAFT_01956 and H281DRAFT_01957 are separated by 57 nucleotidesH281DRAFT_01957 and H281DRAFT_01958 are separated by 194 nucleotides H281DRAFT_01954: H281DRAFT_01954 - hypothetical protein, at 74,264 to 74,542 _01954 H281DRAFT_01955: H281DRAFT_01955 - hypothetical protein, at 74,680 to 75,309 _01955 H281DRAFT_01956: H281DRAFT_01956 - hypothetical protein, at 75,404 to 75,751 _01956 H281DRAFT_01957: H281DRAFT_01957 - Outer membrane protein (porin), at 75,809 to 76,450 _01957 H281DRAFT_01958: H281DRAFT_01958 - integrase/recombinase XerD, at 76,645 to 77,211 _01958 Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 74.422 kb on + strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.422 kb on + strand, within H281DRAFT_01954at 74.448 kb on + strand, within H281DRAFT_01954at 74.449 kb on - strand, within H281DRAFT_01954at 74.453 kb on - strand, within H281DRAFT_01954at 74.459 kb on + strand, within H281DRAFT_01954at 74.460 kb on - strand, within H281DRAFT_01954at 74.462 kb on - strand, within H281DRAFT_01954at 74.465 kb on + strand, within H281DRAFT_01954at 74.466 kb on - strand, within H281DRAFT_01954at 74.489 kb on - strand, within H281DRAFT_01954at 74.598 kb on + strandat 74.598 kb on + strandat 74.607 kb on + strandat 74.607 kb on + strandat 74.672 kb on + strandat 74.681 kb on + strandat 74.681 kb on + strandat 74.711 kb on + strandat 74.711 kb on + strandat 74.711 kb on + strandat 74.712 kb on - strandat 74.712 kb on - strandat 74.757 kb on + strand, within H281DRAFT_01955at 74.757 kb on + strand, within H281DRAFT_01955at 74.758 kb on - strand, within H281DRAFT_01955at 74.758 kb on - strand, within H281DRAFT_01955at 74.758 kb on - strand, within H281DRAFT_01955at 74.766 kb on + strand, within H281DRAFT_01955at 74.766 kb on + strandat 74.767 kb on - strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.880 kb on + strand, within H281DRAFT_01955at 74.880 kb on + strand, within H281DRAFT_01955at 74.881 kb on - strand, within H281DRAFT_01955at 74.881 kb on - strand, within H281DRAFT_01955at 74.967 kb on + strand, within H281DRAFT_01955at 74.967 kb on + strand, within H281DRAFT_01955at 74.968 kb on - strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.017 kb on + strand, within H281DRAFT_01955at 75.026 kb on + strand, within H281DRAFT_01955at 75.026 kb on + strand, within H281DRAFT_01955at 75.027 kb on - strand, within H281DRAFT_01955at 75.090 kb on - strand, within H281DRAFT_01955at 75.090 kb on - strand, within H281DRAFT_01955at 75.156 kb on + strand, within H281DRAFT_01955at 75.157 kb on - strand, within H281DRAFT_01955at 75.196 kb on + strand, within H281DRAFT_01955at 75.196 kb on + strand, within H281DRAFT_01955at 75.298 kb on + strandat 75.298 kb on + strandat 75.298 kb on + strandat 75.298 kb on + strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.351 kb on + strandat 75.352 kb on - strandat 75.352 kb on - strandat 75.399 kb on - strandat 75.399 kb on - strandat 75.425 kb on + strandat 75.469 kb on + strand, within H281DRAFT_01956at 75.504 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.913 kb on - strand, within H281DRAFT_01957at 75.913 kb on - strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.939 kb on + strand, within H281DRAFT_01957at 75.940 kb on - strand, within H281DRAFT_01957at 76.020 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.044 kb on - strand, within H281DRAFT_01957at 76.044 kb on - strand, within H281DRAFT_01957at 76.117 kb on + strandat 76.117 kb on + strand, within H281DRAFT_01957at 76.165 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.184 kb on - strand, within H281DRAFT_01957at 76.184 kb on - strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.186 kb on - strand, within H281DRAFT_01957at 76.194 kb on + strand, within H281DRAFT_01957at 76.195 kb on - strand, within H281DRAFT_01957at 76.195 kb on - strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.312 kb on - strand, within H281DRAFT_01957at 76.312 kb on - strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.330 kb on - strand, within H281DRAFT_01957at 76.330 kb on - strand, within H281DRAFT_01957at 76.330 kb on - strand, within H281DRAFT_01957at 76.330 kb on - strandat 76.548 kb on + strandat 76.561 kb on + strandat 76.561 kb on + strandat 76.562 kb on - strandat 76.562 kb on - strandat 76.574 kb on + strandat 76.575 kb on - strandat 76.575 kb on - strandat 76.632 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.693 kb on - strandat 76.694 kb on + strandat 76.694 kb on + strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.747 kb on + strand, within H281DRAFT_01958

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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74,422 + H281DRAFT_01954 0.57 -0.4
74,422 + H281DRAFT_01954 0.57 -0.8
74,422 + H281DRAFT_01954 0.57 +0.5
74,422 + H281DRAFT_01954 0.57 -0.1
74,448 + H281DRAFT_01954 0.66 +0.4
74,449 - H281DRAFT_01954 0.66 +0.7
74,453 - H281DRAFT_01954 0.68 +0.2
74,459 + H281DRAFT_01954 0.70 -0.2
74,460 - H281DRAFT_01954 0.70 +0.6
74,462 - H281DRAFT_01954 0.71 +0.8
74,465 + H281DRAFT_01954 0.72 +0.5
74,466 - H281DRAFT_01954 0.72 -0.5
74,489 - H281DRAFT_01954 0.81 -1.8
74,598 + -0.7
74,598 + +0.3
74,607 + +0.4
74,607 + +1.1
74,672 + +0.5
74,681 + -0.5
74,681 + +0.3
74,711 + -1.6
74,711 + -0.2
74,711 + -0.3
74,712 - +0.9
74,712 - +0.9
74,757 + H281DRAFT_01955 0.12 +0.4
74,757 + H281DRAFT_01955 0.12 +0.7
74,758 - H281DRAFT_01955 0.12 +1.1
74,758 - H281DRAFT_01955 0.12 -0.9
74,758 - H281DRAFT_01955 0.12 -0.3
74,766 + H281DRAFT_01955 0.14 +0.8
74,766 + +0.7
74,767 - H281DRAFT_01955 0.14 -0.2
74,810 + H281DRAFT_01955 0.21 -0.4
74,810 + H281DRAFT_01955 0.21 -0.3
74,810 + H281DRAFT_01955 0.21 +0.4
74,810 + H281DRAFT_01955 0.21 +1.0
74,810 + H281DRAFT_01955 0.21 +0.3
74,810 + H281DRAFT_01955 0.21 +0.3
74,810 + H281DRAFT_01955 0.21 +0.1
74,811 - H281DRAFT_01955 0.21 +0.1
74,811 - H281DRAFT_01955 0.21 -0.0
74,811 - H281DRAFT_01955 0.21 -0.3
74,811 - H281DRAFT_01955 0.21 +0.1
74,811 - H281DRAFT_01955 0.21 +0.4
74,880 + H281DRAFT_01955 0.32 -0.7
74,880 + H281DRAFT_01955 0.32 -1.5
74,881 - H281DRAFT_01955 0.32 +0.2
74,881 - H281DRAFT_01955 0.32 -0.4
74,967 + H281DRAFT_01955 0.46 +0.2
74,967 + H281DRAFT_01955 0.46 +0.1
74,968 - H281DRAFT_01955 0.46 +0.4
75,015 + H281DRAFT_01955 0.53 +0.3
75,015 + H281DRAFT_01955 0.53 -0.5
75,015 + H281DRAFT_01955 0.53 -0.2
75,015 + H281DRAFT_01955 0.53 -1.0
75,016 - H281DRAFT_01955 0.53 +0.9
75,016 - H281DRAFT_01955 0.53 +1.3
75,016 - H281DRAFT_01955 0.53 -0.1
75,016 - H281DRAFT_01955 0.53 +0.2
75,016 - H281DRAFT_01955 0.53 +0.3
75,016 - H281DRAFT_01955 0.53 +0.9
75,017 + H281DRAFT_01955 0.53 -0.0
75,026 + H281DRAFT_01955 0.55 +0.2
75,026 + H281DRAFT_01955 0.55 -0.2
75,027 - H281DRAFT_01955 0.55 +0.0
75,090 - H281DRAFT_01955 0.65 +1.8
75,090 - H281DRAFT_01955 0.65 -0.0
75,156 + H281DRAFT_01955 0.76 +1.9
75,157 - H281DRAFT_01955 0.76 -1.2
75,196 + H281DRAFT_01955 0.82 +1.1
75,196 + H281DRAFT_01955 0.82 +0.4
75,298 + -1.3
75,298 + -0.6
75,298 + +0.0
75,298 + -0.0
75,299 - -1.9
75,299 - +0.5
75,299 - +1.4
75,299 - -0.7
75,320 + +0.9
75,320 + +0.2
75,320 + +1.6
75,320 + -0.9
75,351 + +0.9
75,352 - +2.6
75,352 - +0.8
75,399 - +0.8
75,399 - +0.8
75,425 + +0.9
75,469 + H281DRAFT_01956 0.19 +0.4
75,504 + H281DRAFT_01956 0.29 -0.4
75,516 + H281DRAFT_01956 0.32 +1.1
75,516 + H281DRAFT_01956 0.32 +0.5
75,516 + H281DRAFT_01956 0.32 +0.6
75,517 - H281DRAFT_01956 0.32 +0.2
75,517 - H281DRAFT_01956 0.32 +0.4
75,517 - H281DRAFT_01956 0.32 -0.0
75,517 - H281DRAFT_01956 0.32 +1.1
75,597 + H281DRAFT_01956 0.55 +2.1
75,597 + H281DRAFT_01956 0.55 +0.8
75,597 + H281DRAFT_01956 0.55 +1.7
75,597 + H281DRAFT_01956 0.55 +0.0
75,597 + H281DRAFT_01956 0.55 +0.4
75,597 + H281DRAFT_01956 0.55 +0.4
75,598 - H281DRAFT_01956 0.56 +0.1
75,598 - H281DRAFT_01956 0.56 +0.3
75,598 - H281DRAFT_01956 0.56 +0.2
75,598 - H281DRAFT_01956 0.56 +0.9
75,598 - H281DRAFT_01956 0.56 -0.5
75,598 - H281DRAFT_01956 0.56 +0.8
75,598 - H281DRAFT_01956 0.56 -0.2
75,598 - H281DRAFT_01956 0.56 +0.9
75,598 - H281DRAFT_01956 0.56 +0.4
75,598 - H281DRAFT_01956 0.56 +0.7
75,912 + H281DRAFT_01957 0.16 +0.2
75,912 + H281DRAFT_01957 0.16 +0.1
75,912 + H281DRAFT_01957 0.16 +0.2
75,912 + H281DRAFT_01957 0.16 +0.2
75,912 + H281DRAFT_01957 0.16 -0.3
75,913 - H281DRAFT_01957 0.16 -0.8
75,913 - H281DRAFT_01957 0.16 -1.4
75,919 + H281DRAFT_01957 0.17 -0.5
75,919 + H281DRAFT_01957 0.17 +1.1
75,919 + H281DRAFT_01957 0.17 -0.3
75,919 + H281DRAFT_01957 0.17 +0.2
75,919 + H281DRAFT_01957 0.17 +0.3
75,920 - H281DRAFT_01957 0.17 +1.1
75,920 - H281DRAFT_01957 0.17 +1.7
75,920 - H281DRAFT_01957 0.17 -0.2
75,920 - H281DRAFT_01957 0.17 -0.3
75,939 + H281DRAFT_01957 0.20 +0.7
75,940 - H281DRAFT_01957 0.20 -0.3
76,020 + H281DRAFT_01957 0.33 +0.7
76,023 + H281DRAFT_01957 0.33 +0.8
76,023 + H281DRAFT_01957 0.33 +0.3
76,023 + H281DRAFT_01957 0.33 +0.5
76,024 - H281DRAFT_01957 0.33 -0.7
76,024 - H281DRAFT_01957 0.33 -0.3
76,024 - H281DRAFT_01957 0.33 +0.3
76,044 - H281DRAFT_01957 0.37 -0.2
76,044 - H281DRAFT_01957 0.37 +0.5
76,117 + -0.5
76,117 + H281DRAFT_01957 0.48 -0.3
76,165 + H281DRAFT_01957 0.55 +0.1
76,183 + H281DRAFT_01957 0.58 -0.4
76,183 + H281DRAFT_01957 0.58 -1.0
76,183 + H281DRAFT_01957 0.58 +0.2
76,184 - H281DRAFT_01957 0.58 +0.1
76,184 - H281DRAFT_01957 0.58 +0.5
76,185 + H281DRAFT_01957 0.59 +1.2
76,185 + H281DRAFT_01957 0.59 -0.3
76,185 + H281DRAFT_01957 0.59 -0.5
76,185 + H281DRAFT_01957 0.59 -1.1
76,185 + H281DRAFT_01957 0.59 -0.0
76,185 + H281DRAFT_01957 0.59 +0.1
76,186 - H281DRAFT_01957 0.59 -1.7
76,194 + H281DRAFT_01957 0.60 +0.4
76,195 - H281DRAFT_01957 0.60 +1.1
76,195 - H281DRAFT_01957 0.60 -0.8
76,311 + H281DRAFT_01957 0.78 +0.0
76,311 + H281DRAFT_01957 0.78 +0.4
76,311 + H281DRAFT_01957 0.78 -1.7
76,311 + H281DRAFT_01957 0.78 +1.3
76,311 + H281DRAFT_01957 0.78 +0.8
76,311 + H281DRAFT_01957 0.78 +0.6
76,312 - H281DRAFT_01957 0.78 +0.2
76,312 - H281DRAFT_01957 0.78 -0.2
76,329 + H281DRAFT_01957 0.81 +0.8
76,329 + H281DRAFT_01957 0.81 +0.6
76,329 + H281DRAFT_01957 0.81 -0.8
76,329 + H281DRAFT_01957 0.81 +0.9
76,329 + H281DRAFT_01957 0.81 +1.1
76,330 - H281DRAFT_01957 0.81 +0.8
76,330 - H281DRAFT_01957 0.81 +0.1
76,330 - H281DRAFT_01957 0.81 -0.2
76,330 - +1.9
76,548 + +0.1
76,561 + +0.7
76,561 + -0.3
76,562 - -0.5
76,562 - -0.9
76,574 + +0.1
76,575 - +0.1
76,575 - -0.5
76,632 + -0.5
76,692 + +0.5
76,692 + +0.7
76,692 + +0.5
76,692 + -0.2
76,692 + +1.9
76,692 + +0.3
76,693 - +0.1
76,694 + -0.3
76,694 + +1.9
76,695 - +0.1
76,695 - +0.4
76,695 - +0.5
76,695 - -0.3
76,695 - +0.9
76,747 + H281DRAFT_01958 0.18 +0.1

Or see this region's nucleotide sequence