Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01934

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01933 and H281DRAFT_01934 are separated by 6 nucleotidesH281DRAFT_01934 and H281DRAFT_01935 are separated by 87 nucleotides H281DRAFT_01933: H281DRAFT_01933 - A/G-specific DNA-adenine glycosylase, at 49,821 to 50,969 _01933 H281DRAFT_01934: H281DRAFT_01934 - DNA-(apurinic or apyrimidinic site) lyase, at 50,976 to 51,806 _01934 H281DRAFT_01935: H281DRAFT_01935 - Tetratricopeptide repeat-containing protein, at 51,894 to 53,735 _01935 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.338 kb on + strandat 50.338 kb on + strand, within H281DRAFT_01933at 50.338 kb on + strand, within H281DRAFT_01933at 50.339 kb on - strand, within H281DRAFT_01933at 50.339 kb on - strand, within H281DRAFT_01933at 50.457 kb on + strand, within H281DRAFT_01933at 50.458 kb on - strand, within H281DRAFT_01933at 50.641 kb on + strand, within H281DRAFT_01933at 50.641 kb on + strand, within H281DRAFT_01933at 50.642 kb on - strand, within H281DRAFT_01933at 50.642 kb on - strand, within H281DRAFT_01933at 50.642 kb on - strand, within H281DRAFT_01933at 50.644 kb on + strand, within H281DRAFT_01933at 50.734 kb on + strand, within H281DRAFT_01933at 50.734 kb on + strand, within H281DRAFT_01933at 50.734 kb on + strandat 50.735 kb on - strand, within H281DRAFT_01933at 50.735 kb on - strand, within H281DRAFT_01933at 50.907 kb on + strandat 51.076 kb on + strand, within H281DRAFT_01934at 51.076 kb on + strand, within H281DRAFT_01934at 51.077 kb on - strand, within H281DRAFT_01934at 51.086 kb on - strandat 51.202 kb on + strand, within H281DRAFT_01934at 51.207 kb on + strand, within H281DRAFT_01934at 51.208 kb on - strand, within H281DRAFT_01934at 51.275 kb on - strand, within H281DRAFT_01934at 51.278 kb on + strand, within H281DRAFT_01934at 51.278 kb on + strand, within H281DRAFT_01934at 51.278 kb on + strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.279 kb on - strand, within H281DRAFT_01934at 51.632 kb on - strand, within H281DRAFT_01934at 51.677 kb on + strand, within H281DRAFT_01934at 51.677 kb on + strand, within H281DRAFT_01934at 51.678 kb on - strand, within H281DRAFT_01934at 51.719 kb on + strand, within H281DRAFT_01934at 51.757 kb on + strandat 51.757 kb on + strandat 51.757 kb on + strandat 51.758 kb on - strandat 51.758 kb on - strandat 51.758 kb on - strandat 51.758 kb on - strandat 51.810 kb on + strandat 51.810 kb on + strandat 51.810 kb on + strandat 51.810 kb on + strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.811 kb on - strandat 51.846 kb on + strandat 51.846 kb on + strandat 51.851 kb on + strandat 51.863 kb on + strandat 51.863 kb on + strandat 51.864 kb on - strandat 52.184 kb on + strand, within H281DRAFT_01935at 52.329 kb on + strand, within H281DRAFT_01935at 52.782 kb on + strand, within H281DRAFT_01935

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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50,338 + +1.1
50,338 + H281DRAFT_01933 0.45 -0.1
50,338 + H281DRAFT_01933 0.45 -0.2
50,339 - H281DRAFT_01933 0.45 +0.1
50,339 - H281DRAFT_01933 0.45 +2.5
50,457 + H281DRAFT_01933 0.55 +0.3
50,458 - H281DRAFT_01933 0.55 -0.2
50,641 + H281DRAFT_01933 0.71 +0.5
50,641 + H281DRAFT_01933 0.71 +0.7
50,642 - H281DRAFT_01933 0.71 +0.4
50,642 - H281DRAFT_01933 0.71 -0.0
50,642 - H281DRAFT_01933 0.71 -0.1
50,644 + H281DRAFT_01933 0.72 -0.1
50,734 + H281DRAFT_01933 0.79 -0.6
50,734 + H281DRAFT_01933 0.79 +0.6
50,734 + +3.1
50,735 - H281DRAFT_01933 0.80 -0.0
50,735 - H281DRAFT_01933 0.80 -0.1
50,907 + -0.6
51,076 + H281DRAFT_01934 0.12 +0.7
51,076 + H281DRAFT_01934 0.12 +0.7
51,077 - H281DRAFT_01934 0.12 -0.5
51,086 - -0.3
51,202 + H281DRAFT_01934 0.27 +0.4
51,207 + H281DRAFT_01934 0.28 +0.5
51,208 - H281DRAFT_01934 0.28 -0.3
51,275 - H281DRAFT_01934 0.36 +0.5
51,278 + H281DRAFT_01934 0.36 +1.2
51,278 + H281DRAFT_01934 0.36 +1.6
51,278 + H281DRAFT_01934 0.36 +1.4
51,279 - H281DRAFT_01934 0.36 -0.1
51,279 - H281DRAFT_01934 0.36 -0.0
51,279 - H281DRAFT_01934 0.36 -0.0
51,279 - H281DRAFT_01934 0.36 -0.4
51,279 - H281DRAFT_01934 0.36 +2.1
51,279 - H281DRAFT_01934 0.36 -0.4
51,279 - H281DRAFT_01934 0.36 -1.2
51,632 - H281DRAFT_01934 0.79 +0.2
51,677 + H281DRAFT_01934 0.84 +0.8
51,677 + H281DRAFT_01934 0.84 -0.2
51,678 - H281DRAFT_01934 0.84 -0.7
51,719 + H281DRAFT_01934 0.89 -0.0
51,757 + +0.0
51,757 + +1.0
51,757 + +0.5
51,758 - -0.3
51,758 - -1.0
51,758 - -1.6
51,758 - -0.3
51,810 + -0.1
51,810 + +0.3
51,810 + +0.9
51,810 + +1.5
51,811 - +0.5
51,811 - +0.5
51,811 - +2.3
51,811 - -1.7
51,811 - -1.3
51,811 - +3.2
51,846 + +0.8
51,846 + -0.6
51,851 + +0.5
51,863 + -1.1
51,863 + +0.7
51,864 - -0.1
52,184 + H281DRAFT_01935 0.16 +0.4
52,329 + H281DRAFT_01935 0.24 -1.4
52,782 + H281DRAFT_01935 0.48 -2.5

Or see this region's nucleotide sequence