Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01368

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01367 and H281DRAFT_01368 are separated by 136 nucleotidesH281DRAFT_01368 and H281DRAFT_01369 are separated by 184 nucleotides H281DRAFT_01367: H281DRAFT_01367 - Protein of unknown function (DUF2891), at 210,034 to 211,044 _01367 H281DRAFT_01368: H281DRAFT_01368 - PRC-barrel domain-containing protein, at 211,181 to 211,606 _01368 H281DRAFT_01369: H281DRAFT_01369 - DNA damage-inducible DNA polymerase II, at 211,791 to 214,157 _01369 Position (kb) 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 210.190 kb on + strand, within H281DRAFT_01367at 210.370 kb on + strand, within H281DRAFT_01367at 210.407 kb on + strand, within H281DRAFT_01367at 210.920 kb on + strand, within H281DRAFT_01367at 210.920 kb on + strand, within H281DRAFT_01367at 210.992 kb on - strandat 210.992 kb on - strandat 210.992 kb on - strandat 210.992 kb on - strandat 211.152 kb on + strandat 211.443 kb on + strand, within H281DRAFT_01368at 211.609 kb on + strandat 211.609 kb on + strandat 211.609 kb on + strandat 211.610 kb on - strandat 212.041 kb on - strand, within H281DRAFT_01369at 212.041 kb on - strand, within H281DRAFT_01369at 212.107 kb on - strand, within H281DRAFT_01369at 212.334 kb on + strand, within H281DRAFT_01369at 212.334 kb on + strand, within H281DRAFT_01369at 212.335 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
210,190 + H281DRAFT_01367 0.15 -1.1
210,370 + H281DRAFT_01367 0.33 -0.2
210,407 + H281DRAFT_01367 0.37 -0.6
210,920 + H281DRAFT_01367 0.88 +0.2
210,920 + H281DRAFT_01367 0.88 -0.2
210,992 - +0.8
210,992 - +0.3
210,992 - -1.4
210,992 - +0.1
211,152 + -0.9
211,443 + H281DRAFT_01368 0.62 -2.0
211,609 + +0.4
211,609 + -0.4
211,609 + -1.3
211,610 - -0.2
212,041 - H281DRAFT_01369 0.11 -0.7
212,041 - H281DRAFT_01369 0.11 +0.6
212,107 - H281DRAFT_01369 0.13 -0.0
212,334 + H281DRAFT_01369 0.23 -0.1
212,334 + H281DRAFT_01369 0.23 -1.0
212,335 - +2.4

Or see this region's nucleotide sequence