Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01284

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01283 and H281DRAFT_01284 are separated by 118 nucleotidesH281DRAFT_01284 and H281DRAFT_01285 are separated by 80 nucleotides H281DRAFT_01283: H281DRAFT_01283 - Pimeloyl-ACP methyl ester carboxylesterase, at 121,583 to 122,434 _01283 H281DRAFT_01284: H281DRAFT_01284 - transcriptional regulator, LysR family, at 122,553 to 123,380 _01284 H281DRAFT_01285: H281DRAFT_01285 - ATP adenylyltransferase, at 123,461 to 124,405 _01285 Position (kb) 122 123 124Strain fitness (log2 ratio) -1 0 1 2at 121.572 kb on + strandat 121.680 kb on + strand, within H281DRAFT_01283at 121.863 kb on - strand, within H281DRAFT_01283at 121.865 kb on - strand, within H281DRAFT_01283at 121.865 kb on - strand, within H281DRAFT_01283at 121.943 kb on + strand, within H281DRAFT_01283at 121.944 kb on - strand, within H281DRAFT_01283at 122.352 kb on + strandat 122.352 kb on + strandat 122.391 kb on - strandat 122.434 kb on + strandat 122.435 kb on - strandat 122.435 kb on - strandat 122.588 kb on + strandat 122.589 kb on - strandat 122.589 kb on - strandat 122.705 kb on - strand, within H281DRAFT_01284at 122.846 kb on - strand, within H281DRAFT_01284at 123.156 kb on + strand, within H281DRAFT_01284at 123.447 kb on - strandat 123.447 kb on - strandat 123.447 kb on - strandat 123.448 kb on + strandat 123.585 kb on + strand, within H281DRAFT_01285at 123.602 kb on - strand, within H281DRAFT_01285at 123.960 kb on + strand, within H281DRAFT_01285at 124.220 kb on + strand, within H281DRAFT_01285at 124.221 kb on - strand, within H281DRAFT_01285at 124.221 kb on - strand, within H281DRAFT_01285

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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121,572 + -0.1
121,680 + H281DRAFT_01283 0.11 +0.8
121,863 - H281DRAFT_01283 0.33 +1.2
121,865 - H281DRAFT_01283 0.33 -0.3
121,865 - H281DRAFT_01283 0.33 +0.7
121,943 + H281DRAFT_01283 0.42 -0.2
121,944 - H281DRAFT_01283 0.42 +0.4
122,352 + +1.1
122,352 + -1.7
122,391 - +0.9
122,434 + +0.3
122,435 - -0.0
122,435 - -0.5
122,588 + -1.5
122,589 - +0.3
122,589 - +0.4
122,705 - H281DRAFT_01284 0.18 +0.3
122,846 - H281DRAFT_01284 0.35 -0.4
123,156 + H281DRAFT_01284 0.73 -1.1
123,447 - +0.3
123,447 - -1.7
123,447 - +0.2
123,448 + -0.5
123,585 + H281DRAFT_01285 0.13 +0.1
123,602 - H281DRAFT_01285 0.15 +1.8
123,960 + H281DRAFT_01285 0.53 +0.6
124,220 + H281DRAFT_01285 0.80 +1.6
124,221 - H281DRAFT_01285 0.80 +0.3
124,221 - H281DRAFT_01285 0.80 +0.8

Or see this region's nucleotide sequence