Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01268 and H281DRAFT_01269 are separated by 104 nucleotides H281DRAFT_01269 and H281DRAFT_01270 are separated by 157 nucleotides H281DRAFT_01270 and H281DRAFT_01271 are separated by 62 nucleotides
H281DRAFT_01268: H281DRAFT_01268 - RNA polymerase sigma-70 factor, ECF subfamily, at 101,890 to 102,771
_01268
H281DRAFT_01269: H281DRAFT_01269 - DNA-binding transcriptional regulator, LysR family, at 102,876 to 103,886
_01269
H281DRAFT_01270: H281DRAFT_01270 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 104,044 to 104,799
_01270
H281DRAFT_01271: H281DRAFT_01271 - diguanylate cyclase (GGDEF) domain-containing protein, at 104,862 to 106,040
_01271
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1 at 102.118 kb on + strand, within H281DRAFT_01268 at 102.121 kb on - strand, within H281DRAFT_01268 at 102.550 kb on - strand, within H281DRAFT_01268 at 102.603 kb on + strand, within H281DRAFT_01268 at 102.603 kb on + strand, within H281DRAFT_01268 at 102.838 kb on + strand at 102.839 kb on - strand at 102.855 kb on - strand at 102.948 kb on + strand at 102.948 kb on + strand at 102.948 kb on + strand at 102.949 kb on - strand at 103.723 kb on - strand, within H281DRAFT_01269 at 103.746 kb on + strand, within H281DRAFT_01269 at 103.746 kb on + strand, within H281DRAFT_01269 at 103.746 kb on + strand, within H281DRAFT_01269 at 103.747 kb on - strand, within H281DRAFT_01269 at 103.804 kb on - strand at 104.416 kb on + strand, within H281DRAFT_01270 at 104.416 kb on + strand, within H281DRAFT_01270 at 104.417 kb on - strand, within H281DRAFT_01270 at 104.639 kb on - strand, within H281DRAFT_01270 at 104.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 102,118 + H281DRAFT_01268 0.26 -0.2 102,121 - H281DRAFT_01268 0.26 +0.3 102,550 - H281DRAFT_01268 0.75 +0.1 102,603 + H281DRAFT_01268 0.81 -0.3 102,603 + H281DRAFT_01268 0.81 -0.1 102,838 + +0.6 102,839 - +1.0 102,855 - -0.3 102,948 + -1.2 102,948 + +1.6 102,948 + +0.2 102,949 - +0.6 103,723 - H281DRAFT_01269 0.84 +1.0 103,746 + H281DRAFT_01269 0.86 -2.7 103,746 + H281DRAFT_01269 0.86 -0.4 103,746 + H281DRAFT_01269 0.86 +0.8 103,747 - H281DRAFT_01269 0.86 +0.6 103,804 - +0.7 104,416 + H281DRAFT_01270 0.49 +0.7 104,416 + H281DRAFT_01270 0.49 -0.3 104,417 - H281DRAFT_01270 0.49 +0.3 104,639 - H281DRAFT_01270 0.79 +0.9 104,867 + -1.3
Or see this region's nucleotide sequence