Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01115

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01114 and H281DRAFT_01115 are separated by 101 nucleotidesH281DRAFT_01115 and H281DRAFT_01116 are separated by 34 nucleotides H281DRAFT_01114: H281DRAFT_01114 - deoxynucleoside transporter, substrate-binding component (from data), at 1,254,018 to 1,255,022 _01114 H281DRAFT_01115: H281DRAFT_01115 - deoxynucleoside transporter, permease component 1 (from data), at 1,255,124 to 1,256,197 _01115 H281DRAFT_01116: H281DRAFT_01116 - deoxyribose kinase (EC 2.7.1.15) (from data), at 1,256,232 to 1,257,194 _01116 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1254.479 kb on - strand, within H281DRAFT_01114at 1254.977 kb on + strandat 1255.358 kb on - strand, within H281DRAFT_01115at 1255.762 kb on + strand, within H281DRAFT_01115at 1255.888 kb on - strand, within H281DRAFT_01115at 1256.268 kb on + strandat 1256.329 kb on - strand, within H281DRAFT_01116at 1257.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,254,479 - H281DRAFT_01114 0.46 -2.7
1,254,977 + -1.1
1,255,358 - H281DRAFT_01115 0.22 -3.7
1,255,762 + H281DRAFT_01115 0.59 -4.6
1,255,888 - H281DRAFT_01115 0.71 -2.7
1,256,268 + -1.7
1,256,329 - H281DRAFT_01116 0.10 -6.0
1,257,146 - -2.5

Or see this region's nucleotide sequence