Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01081

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01080 and H281DRAFT_01081 are separated by 60 nucleotidesH281DRAFT_01081 and H281DRAFT_01082 are separated by 64 nucleotides H281DRAFT_01080: H281DRAFT_01080 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 1,212,861 to 1,213,631 _01080 H281DRAFT_01081: H281DRAFT_01081 - L-glutamine synthetase, at 1,213,692 to 1,215,026 _01081 H281DRAFT_01082: H281DRAFT_01082 - putrescine aminotransferase, at 1,215,091 to 1,216,527 _01082 Position (kb) 1213 1214 1215 1216Strain fitness (log2 ratio) -1 0 1at 1214.101 kb on - strand, within H281DRAFT_01081at 1214.593 kb on - strand, within H281DRAFT_01081at 1214.884 kb on + strand, within H281DRAFT_01081at 1214.964 kb on + strandat 1215.508 kb on - strand, within H281DRAFT_01082at 1215.732 kb on + strand, within H281DRAFT_01082at 1215.826 kb on - strand, within H281DRAFT_01082at 1215.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,214,101 - H281DRAFT_01081 0.31 -0.6
1,214,593 - H281DRAFT_01081 0.67 +0.5
1,214,884 + H281DRAFT_01081 0.89 -0.5
1,214,964 + +0.3
1,215,508 - H281DRAFT_01082 0.29 -0.6
1,215,732 + H281DRAFT_01082 0.45 -0.4
1,215,826 - H281DRAFT_01082 0.51 -0.6
1,215,878 - -1.4

Or see this region's nucleotide sequence