Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00845

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00844 and H281DRAFT_00845 are separated by 4 nucleotidesH281DRAFT_00845 and H281DRAFT_00846 are separated by 98 nucleotides H281DRAFT_00844: H281DRAFT_00844 - RNA polymerase, sigma 38 subunit, RpoS, at 933,067 to 934,146 _00844 H281DRAFT_00845: H281DRAFT_00845 - hypothetical protein, at 934,151 to 934,927 _00845 H281DRAFT_00846: H281DRAFT_00846 - 23S rRNA m(5)U-1939 methyltransferase, at 935,026 to 936,456 _00846 Position (kb) 934 935Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 933.370 kb on + strand, within H281DRAFT_00844at 933.568 kb on + strand, within H281DRAFT_00844at 934.436 kb on + strand, within H281DRAFT_00845at 934.437 kb on - strand, within H281DRAFT_00845at 934.493 kb on + strand, within H281DRAFT_00845at 934.574 kb on + strand, within H281DRAFT_00845at 934.574 kb on + strand, within H281DRAFT_00845at 934.575 kb on - strand, within H281DRAFT_00845at 934.575 kb on - strand, within H281DRAFT_00845at 934.575 kb on - strand, within H281DRAFT_00845at 934.629 kb on - strand, within H281DRAFT_00845at 934.758 kb on - strand, within H281DRAFT_00845at 934.780 kb on + strand, within H281DRAFT_00845at 934.781 kb on - strand, within H281DRAFT_00845at 934.781 kb on - strand, within H281DRAFT_00845at 934.784 kb on + strand, within H281DRAFT_00845at 934.785 kb on - strand, within H281DRAFT_00845at 934.785 kb on - strand, within H281DRAFT_00845at 934.794 kb on - strand, within H281DRAFT_00845at 934.794 kb on - strand, within H281DRAFT_00845at 934.794 kb on - strand, within H281DRAFT_00845at 934.857 kb on + strandat 934.858 kb on - strandat 934.858 kb on - strandat 934.925 kb on + strandat 934.926 kb on - strandat 934.986 kb on - strandat 935.020 kb on + strandat 935.021 kb on - strandat 935.021 kb on - strandat 935.021 kb on - strandat 935.075 kb on - strandat 935.079 kb on + strandat 935.079 kb on + strandat 935.079 kb on + strandat 935.079 kb on + strandat 935.080 kb on - strandat 935.080 kb on - strandat 935.248 kb on + strand, within H281DRAFT_00846at 935.341 kb on + strand, within H281DRAFT_00846at 935.342 kb on - strand, within H281DRAFT_00846at 935.589 kb on + strand, within H281DRAFT_00846at 935.870 kb on - strand, within H281DRAFT_00846at 935.870 kb on - strand, within H281DRAFT_00846at 935.885 kb on - strand, within H281DRAFT_00846

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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933,370 + H281DRAFT_00844 0.28 -0.3
933,568 + H281DRAFT_00844 0.46 +1.0
934,436 + H281DRAFT_00845 0.37 -1.9
934,437 - H281DRAFT_00845 0.37 -1.8
934,493 + H281DRAFT_00845 0.44 -2.7
934,574 + H281DRAFT_00845 0.54 -2.7
934,574 + H281DRAFT_00845 0.54 -0.3
934,575 - H281DRAFT_00845 0.55 +0.9
934,575 - H281DRAFT_00845 0.55 -3.0
934,575 - H281DRAFT_00845 0.55 -1.8
934,629 - H281DRAFT_00845 0.62 -0.3
934,758 - H281DRAFT_00845 0.78 -1.5
934,780 + H281DRAFT_00845 0.81 +0.3
934,781 - H281DRAFT_00845 0.81 -2.7
934,781 - H281DRAFT_00845 0.81 -2.5
934,784 + H281DRAFT_00845 0.81 -2.2
934,785 - H281DRAFT_00845 0.82 -2.7
934,785 - H281DRAFT_00845 0.82 -1.7
934,794 - H281DRAFT_00845 0.83 -2.6
934,794 - H281DRAFT_00845 0.83 -2.3
934,794 - H281DRAFT_00845 0.83 -2.6
934,857 + -3.3
934,858 - -1.5
934,858 - -1.4
934,925 + +0.7
934,926 - +0.2
934,986 - -0.9
935,020 + +0.6
935,021 - +0.5
935,021 - +0.7
935,021 - +0.4
935,075 - -0.2
935,079 + +2.7
935,079 + +0.1
935,079 + +1.0
935,079 + +0.4
935,080 - -0.3
935,080 - -0.4
935,248 + H281DRAFT_00846 0.16 +0.1
935,341 + H281DRAFT_00846 0.22 -3.0
935,342 - H281DRAFT_00846 0.22 +0.7
935,589 + H281DRAFT_00846 0.39 -0.1
935,870 - H281DRAFT_00846 0.59 -1.1
935,870 - H281DRAFT_00846 0.59 +1.2
935,885 - H281DRAFT_00846 0.60 +0.5

Or see this region's nucleotide sequence