Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00786

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00785 and H281DRAFT_00786 are separated by 105 nucleotidesH281DRAFT_00786 and H281DRAFT_00787 are separated by 95 nucleotides H281DRAFT_00785: H281DRAFT_00785 - 2-hydroxy-3-oxopropionate reductase, at 871,836 to 872,744 _00785 H281DRAFT_00786: H281DRAFT_00786 - hydroxypyruvate isomerase, at 872,850 to 873,659 _00786 H281DRAFT_00787: H281DRAFT_00787 - tartronate-semialdehyde synthase, at 873,755 to 875,530 _00787 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1at 871.951 kb on - strand, within H281DRAFT_00785at 871.992 kb on + strand, within H281DRAFT_00785at 872.280 kb on - strand, within H281DRAFT_00785at 872.280 kb on - strand, within H281DRAFT_00785at 872.939 kb on - strand, within H281DRAFT_00786at 872.962 kb on + strand, within H281DRAFT_00786at 873.130 kb on + strand, within H281DRAFT_00786at 873.217 kb on + strand, within H281DRAFT_00786at 873.237 kb on + strand, within H281DRAFT_00786at 873.238 kb on - strand, within H281DRAFT_00786at 874.134 kb on + strand, within H281DRAFT_00787at 874.134 kb on + strand, within H281DRAFT_00787at 874.311 kb on + strand, within H281DRAFT_00787at 874.312 kb on - strand, within H281DRAFT_00787at 874.366 kb on - strand, within H281DRAFT_00787at 874.654 kb on + strand, within H281DRAFT_00787

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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871,951 - H281DRAFT_00785 0.13 -0.5
871,992 + H281DRAFT_00785 0.17 -1.0
872,280 - H281DRAFT_00785 0.49 -1.5
872,280 - H281DRAFT_00785 0.49 -1.1
872,939 - H281DRAFT_00786 0.11 -0.2
872,962 + H281DRAFT_00786 0.14 -1.5
873,130 + H281DRAFT_00786 0.35 -1.7
873,217 + H281DRAFT_00786 0.45 -1.4
873,237 + H281DRAFT_00786 0.48 -1.8
873,238 - H281DRAFT_00786 0.48 -1.7
874,134 + H281DRAFT_00787 0.21 -1.4
874,134 + H281DRAFT_00787 0.21 -2.2
874,311 + H281DRAFT_00787 0.31 -0.2
874,312 - H281DRAFT_00787 0.31 +0.3
874,366 - H281DRAFT_00787 0.34 -2.5
874,654 + H281DRAFT_00787 0.51 -2.4

Or see this region's nucleotide sequence