Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00748

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00746 and H281DRAFT_00747 are separated by 285 nucleotidesH281DRAFT_00747 and H281DRAFT_00748 are separated by 280 nucleotidesH281DRAFT_00748 and H281DRAFT_00749 are separated by 4 nucleotidesH281DRAFT_00749 and H281DRAFT_00750 are separated by 99 nucleotidesH281DRAFT_00750 and H281DRAFT_00751 are separated by 48 nucleotides H281DRAFT_00746: H281DRAFT_00746 - ADP-ribose pyrophosphatase YjhB, NUDIX family, at 842,424 to 842,969 _00746 H281DRAFT_00747: H281DRAFT_00747 - tRNA_Met_CAT, at 843,255 to 843,331 _00747 H281DRAFT_00748: H281DRAFT_00748 - Uncharacterized protein, UPF0303 family, at 843,612 to 844,154 _00748 H281DRAFT_00749: H281DRAFT_00749 - small multidrug resistance pump, at 844,159 to 844,497 _00749 H281DRAFT_00750: H281DRAFT_00750 - hypothetical protein, at 844,597 to 844,977 _00750 H281DRAFT_00751: H281DRAFT_00751 - hypothetical protein, at 845,026 to 845,217 _00751 Position (kb) 843 844 845Strain fitness (log2 ratio) -2 -1 0 1at 842.626 kb on + strand, within H281DRAFT_00746at 842.626 kb on + strandat 842.683 kb on - strand, within H281DRAFT_00746at 842.811 kb on + strand, within H281DRAFT_00746at 842.811 kb on + strand, within H281DRAFT_00746at 842.870 kb on - strand, within H281DRAFT_00746at 842.895 kb on + strand, within H281DRAFT_00746at 842.970 kb on - strandat 842.993 kb on + strandat 842.994 kb on - strandat 842.994 kb on - strandat 843.097 kb on - strandat 843.097 kb on - strandat 843.108 kb on - strandat 843.280 kb on + strand, within H281DRAFT_00747at 843.281 kb on - strand, within H281DRAFT_00747at 843.281 kb on - strand, within H281DRAFT_00747at 843.295 kb on - strand, within H281DRAFT_00747at 843.376 kb on + strandat 843.397 kb on - strandat 843.520 kb on - strandat 843.566 kb on + strandat 843.753 kb on + strand, within H281DRAFT_00748at 843.987 kb on + strand, within H281DRAFT_00748at 844.125 kb on + strandat 844.125 kb on + strandat 844.174 kb on + strandat 844.174 kb on + strandat 844.174 kb on + strandat 844.175 kb on - strandat 844.175 kb on - strandat 844.297 kb on + strand, within H281DRAFT_00749at 844.297 kb on + strand, within H281DRAFT_00749at 844.298 kb on - strand, within H281DRAFT_00749at 844.382 kb on + strand, within H281DRAFT_00749at 844.382 kb on + strand, within H281DRAFT_00749at 844.400 kb on - strand, within H281DRAFT_00749at 844.542 kb on + strandat 844.543 kb on - strandat 844.543 kb on - strandat 844.598 kb on + strandat 844.707 kb on - strand, within H281DRAFT_00750at 844.743 kb on - strand, within H281DRAFT_00750at 844.888 kb on + strand, within H281DRAFT_00750at 844.888 kb on + strand, within H281DRAFT_00750at 845.043 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
842,626 + H281DRAFT_00746 0.37 -0.5
842,626 + -0.3
842,683 - H281DRAFT_00746 0.47 -0.4
842,811 + H281DRAFT_00746 0.71 -1.4
842,811 + H281DRAFT_00746 0.71 -1.0
842,870 - H281DRAFT_00746 0.82 -2.5
842,895 + H281DRAFT_00746 0.86 -2.3
842,970 - -0.5
842,993 + -0.3
842,994 - +0.3
842,994 - +0.9
843,097 - +0.2
843,097 - +0.5
843,108 - +0.4
843,280 + H281DRAFT_00747 0.32 -2.1
843,281 - H281DRAFT_00747 0.34 -2.2
843,281 - H281DRAFT_00747 0.34 +0.0
843,295 - H281DRAFT_00747 0.52 +1.1
843,376 + -0.5
843,397 - +0.1
843,520 - +0.5
843,566 + +0.6
843,753 + H281DRAFT_00748 0.26 +1.2
843,987 + H281DRAFT_00748 0.69 +0.4
844,125 + +1.0
844,125 + -0.3
844,174 + +0.0
844,174 + -0.7
844,174 + +0.1
844,175 - +1.0
844,175 - +0.7
844,297 + H281DRAFT_00749 0.41 -1.3
844,297 + H281DRAFT_00749 0.41 -0.4
844,298 - H281DRAFT_00749 0.41 +0.4
844,382 + H281DRAFT_00749 0.66 -0.3
844,382 + H281DRAFT_00749 0.66 -1.4
844,400 - H281DRAFT_00749 0.71 +0.5
844,542 + -0.0
844,543 - -0.2
844,543 - +0.4
844,598 + +1.0
844,707 - H281DRAFT_00750 0.29 -1.7
844,743 - H281DRAFT_00750 0.38 -0.3
844,888 + H281DRAFT_00750 0.76 -0.3
844,888 + H281DRAFT_00750 0.76 -0.5
845,043 + +0.3

Or see this region's nucleotide sequence