Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00299

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00297 and H281DRAFT_00298 are separated by 195 nucleotidesH281DRAFT_00298 and H281DRAFT_00299 are separated by 264 nucleotidesH281DRAFT_00299 and H281DRAFT_00300 are separated by 275 nucleotides H281DRAFT_00297: H281DRAFT_00297 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 317,221 to 319,143 _00297 H281DRAFT_00298: H281DRAFT_00298 - hypothetical protein, at 319,339 to 319,584 _00298 H281DRAFT_00299: H281DRAFT_00299 - Protein of unknown function (DUF3096), at 319,849 to 320,001 _00299 H281DRAFT_00300: H281DRAFT_00300 - 6-phosphogluconolactonase, at 320,277 to 321,581 _00300 Position (kb) 319 320 321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 318.881 kb on - strand, within H281DRAFT_00297at 319.079 kb on + strandat 319.111 kb on + strandat 319.111 kb on + strandat 319.111 kb on + strandat 319.240 kb on - strandat 319.240 kb on - strandat 319.245 kb on + strandat 319.245 kb on + strandat 319.245 kb on + strandat 319.246 kb on - strandat 319.246 kb on - strandat 319.255 kb on - strandat 319.522 kb on + strand, within H281DRAFT_00298at 319.523 kb on - strand, within H281DRAFT_00298at 319.523 kb on - strand, within H281DRAFT_00298at 319.657 kb on + strandat 319.658 kb on - strandat 319.658 kb on - strandat 319.658 kb on - strandat 319.816 kb on + strandat 319.905 kb on - strand, within H281DRAFT_00299at 319.917 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.919 kb on + strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.920 kb on - strand, within H281DRAFT_00299at 319.951 kb on + strand, within H281DRAFT_00299at 319.952 kb on - strand, within H281DRAFT_00299at 320.005 kb on + strandat 320.006 kb on - strandat 320.012 kb on + strandat 320.024 kb on - strandat 320.114 kb on - strandat 320.179 kb on + strandat 320.179 kb on + strandat 320.180 kb on - strandat 320.181 kb on + strandat 320.181 kb on + strandat 320.182 kb on - strandat 320.182 kb on - strandat 320.194 kb on + strandat 320.194 kb on + strandat 320.195 kb on - strandat 320.237 kb on - strandat 320.237 kb on - strandat 320.237 kb on - strandat 320.256 kb on - strandat 320.264 kb on + strandat 320.274 kb on + strandat 320.275 kb on - strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.276 kb on + strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.277 kb on - strandat 320.321 kb on + strandat 320.322 kb on - strandat 320.338 kb on - strandat 320.408 kb on - strand, within H281DRAFT_00300at 320.408 kb on - strand, within H281DRAFT_00300at 320.491 kb on - strand, within H281DRAFT_00300at 320.511 kb on + strand, within H281DRAFT_00300at 320.511 kb on + strand, within H281DRAFT_00300at 320.512 kb on - strand, within H281DRAFT_00300at 320.512 kb on - strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.538 kb on + strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.539 kb on - strand, within H281DRAFT_00300at 320.610 kb on + strand, within H281DRAFT_00300at 320.611 kb on - strand, within H281DRAFT_00300at 320.611 kb on - strand, within H281DRAFT_00300at 320.643 kb on + strand, within H281DRAFT_00300at 320.778 kb on + strand, within H281DRAFT_00300at 320.778 kb on + strand, within H281DRAFT_00300at 320.779 kb on - strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.806 kb on - strand, within H281DRAFT_00300at 320.992 kb on - strand, within H281DRAFT_00300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
318,881 - H281DRAFT_00297 0.86 -0.3
319,079 + +0.4
319,111 + +0.5
319,111 + -1.0
319,111 + +0.7
319,240 - -0.8
319,240 - +0.2
319,245 + +0.9
319,245 + +0.0
319,245 + -0.2
319,246 - +2.6
319,246 - +0.1
319,255 - +1.5
319,522 + H281DRAFT_00298 0.74 +1.5
319,523 - H281DRAFT_00298 0.75 +0.4
319,523 - H281DRAFT_00298 0.75 +1.4
319,657 + +0.2
319,658 - +0.5
319,658 - +0.6
319,658 - +0.6
319,816 + +0.8
319,905 - H281DRAFT_00299 0.37 +1.0
319,917 + H281DRAFT_00299 0.44 +0.8
319,919 + H281DRAFT_00299 0.46 -0.6
319,919 + H281DRAFT_00299 0.46 -0.1
319,919 + H281DRAFT_00299 0.46 +0.1
319,919 + H281DRAFT_00299 0.46 +0.8
319,920 - H281DRAFT_00299 0.46 -0.5
319,920 - H281DRAFT_00299 0.46 +0.5
319,920 - H281DRAFT_00299 0.46 +0.3
319,920 - H281DRAFT_00299 0.46 +0.1
319,920 - H281DRAFT_00299 0.46 -0.6
319,920 - H281DRAFT_00299 0.46 +0.4
319,951 + H281DRAFT_00299 0.67 -0.6
319,952 - H281DRAFT_00299 0.67 -0.2
320,005 + -0.2
320,006 - -0.2
320,012 + +0.3
320,024 - -0.2
320,114 - +0.5
320,179 + +0.4
320,179 + -0.8
320,180 - +0.0
320,181 + -0.0
320,181 + +0.3
320,182 - +0.3
320,182 - -0.3
320,194 + +1.0
320,194 + -1.1
320,195 - -0.2
320,237 - +0.7
320,237 - -2.6
320,237 - +0.7
320,256 - -1.4
320,264 + +0.6
320,274 + -1.0
320,275 - +0.1
320,276 + -0.3
320,276 + -0.1
320,276 + -0.0
320,276 + +0.4
320,276 + +0.3
320,277 - +0.3
320,277 - -0.4
320,277 - +2.2
320,277 - -0.1
320,277 - +1.6
320,277 - -1.0
320,321 + -0.2
320,322 - -2.9
320,338 - -1.4
320,408 - H281DRAFT_00300 0.10 -0.2
320,408 - H281DRAFT_00300 0.10 +0.1
320,491 - H281DRAFT_00300 0.16 +0.7
320,511 + H281DRAFT_00300 0.18 -0.5
320,511 + H281DRAFT_00300 0.18 -0.3
320,512 - H281DRAFT_00300 0.18 +0.4
320,512 - H281DRAFT_00300 0.18 +0.4
320,538 + H281DRAFT_00300 0.20 +0.2
320,538 + H281DRAFT_00300 0.20 +0.7
320,538 + H281DRAFT_00300 0.20 +0.9
320,538 + H281DRAFT_00300 0.20 -0.4
320,538 + H281DRAFT_00300 0.20 -0.1
320,538 + H281DRAFT_00300 0.20 +0.1
320,538 + H281DRAFT_00300 0.20 -0.1
320,538 + H281DRAFT_00300 0.20 -0.1
320,538 + H281DRAFT_00300 0.20 -0.3
320,538 + H281DRAFT_00300 0.20 +0.3
320,538 + H281DRAFT_00300 0.20 +0.1
320,539 - H281DRAFT_00300 0.20 +0.5
320,539 - H281DRAFT_00300 0.20 -0.8
320,539 - H281DRAFT_00300 0.20 -2.0
320,539 - H281DRAFT_00300 0.20 +0.1
320,539 - H281DRAFT_00300 0.20 +0.6
320,539 - H281DRAFT_00300 0.20 -0.3
320,539 - H281DRAFT_00300 0.20 +0.5
320,539 - H281DRAFT_00300 0.20 +0.4
320,539 - H281DRAFT_00300 0.20 +1.1
320,610 + H281DRAFT_00300 0.26 -0.2
320,611 - H281DRAFT_00300 0.26 +0.1
320,611 - H281DRAFT_00300 0.26 +0.9
320,643 + H281DRAFT_00300 0.28 -0.0
320,778 + H281DRAFT_00300 0.38 -0.6
320,778 + H281DRAFT_00300 0.38 -0.6
320,779 - H281DRAFT_00300 0.38 -0.1
320,805 + H281DRAFT_00300 0.40 +1.7
320,805 + H281DRAFT_00300 0.40 -0.7
320,805 + H281DRAFT_00300 0.40 +3.6
320,806 - H281DRAFT_00300 0.41 +0.8
320,992 - H281DRAFT_00300 0.55 -0.5

Or see this region's nucleotide sequence