Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00294 and H281DRAFT_00295 are separated by 66 nucleotides H281DRAFT_00295 and H281DRAFT_00296 are separated by 208 nucleotides H281DRAFT_00296 and H281DRAFT_00297 are separated by 180 nucleotides
H281DRAFT_00294: H281DRAFT_00294 - electron transport complex protein RnfB, at 313,755 to 314,789
_00294
H281DRAFT_00295: H281DRAFT_00295 - transcriptional regulator, TetR family, at 314,856 to 315,554
_00295
H281DRAFT_00296: H281DRAFT_00296 - poly(3-hydroxybutyrate) depolymerase, at 315,763 to 317,040
_00296
H281DRAFT_00297: H281DRAFT_00297 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 317,221 to 319,143
_00297
Position (kb) 315
316
317
318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 314.856 kb on - strand at 314.856 kb on - strand at 315.069 kb on + strand, within H281DRAFT_00295 at 315.069 kb on + strand, within H281DRAFT_00295 at 315.075 kb on + strand, within H281DRAFT_00295 at 315.110 kb on - strand, within H281DRAFT_00295 at 315.188 kb on + strand, within H281DRAFT_00295 at 315.188 kb on + strand, within H281DRAFT_00295 at 315.279 kb on + strand, within H281DRAFT_00295 at 315.280 kb on - strand, within H281DRAFT_00295 at 315.281 kb on + strand, within H281DRAFT_00295 at 315.281 kb on + strand, within H281DRAFT_00295 at 315.281 kb on + strand, within H281DRAFT_00295 at 315.281 kb on + strand, within H281DRAFT_00295 at 315.281 kb on + strand, within H281DRAFT_00295 at 315.282 kb on - strand, within H281DRAFT_00295 at 315.282 kb on - strand, within H281DRAFT_00295 at 315.403 kb on - strand, within H281DRAFT_00295 at 315.403 kb on - strand at 315.427 kb on - strand, within H281DRAFT_00295 at 315.429 kb on + strand, within H281DRAFT_00295 at 315.429 kb on + strand, within H281DRAFT_00295 at 315.429 kb on + strand, within H281DRAFT_00295 at 315.429 kb on + strand, within H281DRAFT_00295 at 315.430 kb on - strand, within H281DRAFT_00295 at 315.537 kb on + strand at 315.538 kb on - strand at 315.678 kb on + strand at 315.679 kb on - strand at 315.679 kb on - strand at 315.870 kb on + strand at 315.871 kb on - strand at 315.871 kb on - strand at 315.875 kb on + strand at 316.106 kb on + strand, within H281DRAFT_00296 at 316.139 kb on + strand, within H281DRAFT_00296 at 316.139 kb on + strand, within H281DRAFT_00296 at 316.140 kb on - strand, within H281DRAFT_00296 at 316.148 kb on + strand, within H281DRAFT_00296 at 316.301 kb on + strand, within H281DRAFT_00296 at 316.346 kb on + strand, within H281DRAFT_00296 at 316.389 kb on + strand, within H281DRAFT_00296 at 316.559 kb on + strand, within H281DRAFT_00296 at 316.625 kb on + strand, within H281DRAFT_00296 at 316.626 kb on - strand, within H281DRAFT_00296 at 316.934 kb on + strand at 316.934 kb on + strand at 317.007 kb on + strand at 317.007 kb on + strand at 317.034 kb on - strand at 317.126 kb on - strand at 317.154 kb on + strand at 317.157 kb on - strand at 317.157 kb on - strand at 317.228 kb on - strand at 317.295 kb on + strand at 317.477 kb on + strand, within H281DRAFT_00297 at 317.478 kb on - strand, within H281DRAFT_00297 at 317.478 kb on - strand, within H281DRAFT_00297 at 317.650 kb on - strand, within H281DRAFT_00297 at 317.656 kb on + strand, within H281DRAFT_00297 at 317.656 kb on + strand, within H281DRAFT_00297 at 317.656 kb on + strand, within H281DRAFT_00297 at 317.657 kb on - strand, within H281DRAFT_00297 at 317.733 kb on - strand, within H281DRAFT_00297 at 317.733 kb on - strand, within H281DRAFT_00297
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 314,856 - +1.1 314,856 - -0.4 315,069 + H281DRAFT_00295 0.30 -0.4 315,069 + H281DRAFT_00295 0.30 +0.5 315,075 + H281DRAFT_00295 0.31 -0.2 315,110 - H281DRAFT_00295 0.36 +0.2 315,188 + H281DRAFT_00295 0.47 -1.9 315,188 + H281DRAFT_00295 0.47 -0.1 315,279 + H281DRAFT_00295 0.61 +0.8 315,280 - H281DRAFT_00295 0.61 -1.7 315,281 + H281DRAFT_00295 0.61 +0.8 315,281 + H281DRAFT_00295 0.61 -0.4 315,281 + H281DRAFT_00295 0.61 +0.9 315,281 + H281DRAFT_00295 0.61 -0.2 315,281 + H281DRAFT_00295 0.61 -1.4 315,282 - H281DRAFT_00295 0.61 -0.6 315,282 - H281DRAFT_00295 0.61 -0.2 315,403 - H281DRAFT_00295 0.78 -1.0 315,403 - -0.8 315,427 - H281DRAFT_00295 0.82 +0.0 315,429 + H281DRAFT_00295 0.82 -1.6 315,429 + H281DRAFT_00295 0.82 -0.5 315,429 + H281DRAFT_00295 0.82 -0.7 315,429 + H281DRAFT_00295 0.82 +0.2 315,430 - H281DRAFT_00295 0.82 +0.1 315,537 + +2.1 315,538 - -1.3 315,678 + -0.6 315,679 - +0.4 315,679 - +0.1 315,870 + -0.1 315,871 - -1.0 315,871 - -2.2 315,875 + -0.7 316,106 + H281DRAFT_00296 0.27 -0.5 316,139 + H281DRAFT_00296 0.29 +0.1 316,139 + H281DRAFT_00296 0.29 -1.5 316,140 - H281DRAFT_00296 0.29 -0.6 316,148 + H281DRAFT_00296 0.30 -0.2 316,301 + H281DRAFT_00296 0.42 -1.5 316,346 + H281DRAFT_00296 0.46 -0.5 316,389 + H281DRAFT_00296 0.49 -2.1 316,559 + H281DRAFT_00296 0.62 -0.2 316,625 + H281DRAFT_00296 0.67 -2.1 316,626 - H281DRAFT_00296 0.68 +0.4 316,934 + -0.5 316,934 + -0.1 317,007 + -2.4 317,007 + -1.3 317,034 - -0.5 317,126 - -1.3 317,154 + -0.6 317,157 - +0.6 317,157 - -0.5 317,228 - -0.5 317,295 + +0.0 317,477 + H281DRAFT_00297 0.13 +0.2 317,478 - H281DRAFT_00297 0.13 -0.2 317,478 - H281DRAFT_00297 0.13 -0.7 317,650 - H281DRAFT_00297 0.22 -0.7 317,656 + H281DRAFT_00297 0.23 +0.3 317,656 + H281DRAFT_00297 0.23 +1.1 317,656 + H281DRAFT_00297 0.23 -0.2 317,657 - H281DRAFT_00297 0.23 -0.8 317,733 - H281DRAFT_00297 0.27 -0.5 317,733 - H281DRAFT_00297 0.27 +0.1
Or see this region's nucleotide sequence