Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00199

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00198 and H281DRAFT_00199 overlap by 1 nucleotidesH281DRAFT_00199 and H281DRAFT_00200 are separated by 2 nucleotides H281DRAFT_00198: H281DRAFT_00198 - hydroxymethylbilane synthase, at 215,012 to 216,049 _00198 H281DRAFT_00199: H281DRAFT_00199 - uroporphyrinogen III methyltransferase / synthase, at 216,049 to 218,067 _00199 H281DRAFT_00200: H281DRAFT_00200 - HemY protein, at 218,070 to 219,260 _00200 Position (kb) 216 217 218 219Strain fitness (log2 ratio) -2 -1 0 1 2 3at 216.903 kb on - strand, within H281DRAFT_00199at 217.813 kb on + strand, within H281DRAFT_00199at 217.814 kb on - strand, within H281DRAFT_00199at 218.090 kb on - strandat 218.090 kb on - strandat 218.090 kb on - strandat 218.242 kb on - strand, within H281DRAFT_00200at 218.475 kb on + strandat 218.867 kb on - strand, within H281DRAFT_00200

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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216,903 - H281DRAFT_00199 0.42 -2.6
217,813 + H281DRAFT_00199 0.87 -1.7
217,814 - H281DRAFT_00199 0.87 -0.8
218,090 - +0.6
218,090 - +0.2
218,090 - +3.2
218,242 - H281DRAFT_00200 0.14 +0.5
218,475 + +1.3
218,867 - H281DRAFT_00200 0.67 -0.1

Or see this region's nucleotide sequence