Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19110

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19100 and CSW01_19105 are separated by 149 nucleotidesCSW01_19105 and CSW01_19110 are separated by 71 nucleotidesCSW01_19110 and CSW01_19115 are separated by 200 nucleotides CSW01_19100: CSW01_19100 - alkene reductase, at 950,650 to 951,693 _19100 CSW01_19105: CSW01_19105 - TetR/AcrR family transcriptional regulator, at 951,843 to 952,418 _19105 CSW01_19110: CSW01_19110 - LysE family translocator, at 952,490 to 953,119 _19110 CSW01_19115: CSW01_19115 - AraC family transcriptional regulator, at 953,320 to 954,153 _19115 Position (kb) 952 953 954Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 951.493 kb on + strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.501 kb on - strand, within CSW01_19100at 951.510 kb on + strand, within CSW01_19100at 951.610 kb on - strandat 951.610 kb on - strandat 951.613 kb on + strandat 951.691 kb on + strandat 951.909 kb on + strand, within CSW01_19105at 951.952 kb on + strand, within CSW01_19105at 952.086 kb on + strand, within CSW01_19105at 952.087 kb on + strand, within CSW01_19105at 952.092 kb on + strand, within CSW01_19105at 952.095 kb on - strand, within CSW01_19105at 952.105 kb on - strand, within CSW01_19105at 952.253 kb on + strand, within CSW01_19105at 952.295 kb on - strand, within CSW01_19105at 952.365 kb on + strandat 952.365 kb on + strandat 952.582 kb on + strand, within CSW01_19110at 952.604 kb on + strand, within CSW01_19110at 952.613 kb on - strand, within CSW01_19110at 952.645 kb on - strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.659 kb on - strand, within CSW01_19110at 952.661 kb on - strand, within CSW01_19110at 952.708 kb on - strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.818 kb on - strand, within CSW01_19110at 952.831 kb on - strand, within CSW01_19110at 952.868 kb on - strand, within CSW01_19110at 952.868 kb on - strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.878 kb on - strand, within CSW01_19110at 952.878 kb on - strand, within CSW01_19110at 952.955 kb on + strand, within CSW01_19110at 952.990 kb on - strand, within CSW01_19110at 953.048 kb on + strand, within CSW01_19110at 953.048 kb on + strand, within CSW01_19110at 953.245 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.395 kb on - strandat 953.395 kb on - strandat 953.397 kb on + strandat 953.409 kb on + strand, within CSW01_19115at 953.438 kb on + strand, within CSW01_19115at 953.446 kb on + strand, within CSW01_19115at 953.453 kb on + strand, within CSW01_19115at 953.453 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.515 kb on + strand, within CSW01_19115at 953.573 kb on - strand, within CSW01_19115at 953.587 kb on - strand, within CSW01_19115at 953.788 kb on - strand, within CSW01_19115at 953.990 kb on - strand, within CSW01_19115at 954.015 kb on - strand, within CSW01_19115at 954.029 kb on + strand, within CSW01_19115at 954.040 kb on + strand, within CSW01_19115at 954.051 kb on + strand, within CSW01_19115at 954.051 kb on + strand, within CSW01_19115

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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951,493 + CSW01_19100 0.81 -0.5
951,493 + CSW01_19100 0.81 -0.5
951,501 - CSW01_19100 0.82 +1.0
951,510 + CSW01_19100 0.82 +0.8
951,610 - -2.0
951,610 - -0.9
951,613 + +0.3
951,691 + -1.1
951,909 + CSW01_19105 0.11 -0.6
951,952 + CSW01_19105 0.19 +0.1
952,086 + CSW01_19105 0.42 -1.5
952,087 + CSW01_19105 0.42 +2.1
952,092 + CSW01_19105 0.43 +1.7
952,095 - CSW01_19105 0.44 -1.1
952,105 - CSW01_19105 0.45 -0.7
952,253 + CSW01_19105 0.71 -0.3
952,295 - CSW01_19105 0.78 -1.1
952,365 + -0.7
952,365 + +0.0
952,582 + CSW01_19110 0.15 -1.6
952,604 + CSW01_19110 0.18 -0.2
952,613 - CSW01_19110 0.20 +0.5
952,645 - CSW01_19110 0.25 +0.0
952,653 + CSW01_19110 0.26 -1.6
952,653 + CSW01_19110 0.26 -0.6
952,659 - CSW01_19110 0.27 +1.7
952,661 - CSW01_19110 0.27 -3.2
952,708 - CSW01_19110 0.35 -1.8
952,810 + CSW01_19110 0.51 -0.7
952,810 + CSW01_19110 0.51 -1.6
952,810 + CSW01_19110 0.51 +0.4
952,810 + CSW01_19110 0.51 -3.9
952,818 - CSW01_19110 0.52 -0.7
952,831 - CSW01_19110 0.54 -0.1
952,868 - CSW01_19110 0.60 +1.4
952,868 - CSW01_19110 0.60 +0.7
952,870 + CSW01_19110 0.60 -1.2
952,870 + CSW01_19110 0.60 +0.7
952,870 + CSW01_19110 0.60 +0.7
952,878 - CSW01_19110 0.62 -1.7
952,878 - CSW01_19110 0.62 +0.1
952,955 + CSW01_19110 0.74 -0.3
952,990 - CSW01_19110 0.79 +1.0
953,048 + CSW01_19110 0.89 +0.7
953,048 + CSW01_19110 0.89 +0.2
953,245 + +0.7
953,387 + -0.1
953,387 + +0.6
953,387 + +0.3
953,387 + +0.1
953,395 - +1.2
953,395 - +1.5
953,397 + +0.6
953,409 + CSW01_19115 0.11 -2.3
953,438 + CSW01_19115 0.14 +0.3
953,446 + CSW01_19115 0.15 +0.6
953,453 + CSW01_19115 0.16 +1.5
953,453 - CSW01_19115 0.16 -2.8
953,455 - CSW01_19115 0.16 -0.8
953,455 - CSW01_19115 0.16 -0.1
953,455 - CSW01_19115 0.16 -2.3
953,515 + CSW01_19115 0.23 -0.2
953,573 - CSW01_19115 0.30 -0.0
953,587 - CSW01_19115 0.32 -1.6
953,788 - CSW01_19115 0.56 -0.3
953,990 - CSW01_19115 0.80 -2.1
954,015 - CSW01_19115 0.83 -1.9
954,029 + CSW01_19115 0.85 -2.8
954,040 + CSW01_19115 0.86 +0.8
954,051 + CSW01_19115 0.88 +0.4
954,051 + CSW01_19115 0.88 +0.9

Or see this region's nucleotide sequence