Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18985

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18975 and CSW01_18980 are separated by 56 nucleotidesCSW01_18980 and CSW01_18985 are separated by 32 nucleotidesCSW01_18985 and CSW01_18990 are separated by 214 nucleotides CSW01_18975: CSW01_18975 - MFS transporter, at 916,518 to 917,822 _18975 CSW01_18980: CSW01_18980 - hypothetical protein, at 917,879 to 918,052 _18980 CSW01_18985: CSW01_18985 - methyl-accepting chemotaxis protein, at 918,085 to 919,770 _18985 CSW01_18990: CSW01_18990 - ATP-dependent protease, at 919,985 to 922,345 _18990 Position (kb) 918 919 920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 917.204 kb on + strand, within CSW01_18975at 917.204 kb on + strand, within CSW01_18975at 917.213 kb on - strand, within CSW01_18975at 917.273 kb on + strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.474 kb on - strand, within CSW01_18975at 917.511 kb on - strand, within CSW01_18975at 917.518 kb on - strand, within CSW01_18975at 917.579 kb on + strand, within CSW01_18975at 917.587 kb on - strand, within CSW01_18975at 917.637 kb on + strand, within CSW01_18975at 917.705 kb on - strandat 917.729 kb on + strandat 917.729 kb on + strandat 918.270 kb on - strand, within CSW01_18985at 918.325 kb on + strand, within CSW01_18985at 918.365 kb on - strand, within CSW01_18985at 918.404 kb on + strand, within CSW01_18985at 918.404 kb on + strand, within CSW01_18985at 918.420 kb on - strand, within CSW01_18985at 918.452 kb on - strand, within CSW01_18985at 918.580 kb on - strand, within CSW01_18985at 918.593 kb on + strand, within CSW01_18985at 918.601 kb on - strand, within CSW01_18985at 918.641 kb on + strand, within CSW01_18985at 918.656 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.929 kb on + strand, within CSW01_18985at 918.934 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.937 kb on - strand, within CSW01_18985at 918.952 kb on + strand, within CSW01_18985at 918.957 kb on + strand, within CSW01_18985at 919.159 kb on + strand, within CSW01_18985at 919.159 kb on + strand, within CSW01_18985at 919.167 kb on - strand, within CSW01_18985at 919.167 kb on - strand, within CSW01_18985at 919.176 kb on + strand, within CSW01_18985at 919.184 kb on - strand, within CSW01_18985at 919.195 kb on + strand, within CSW01_18985at 919.291 kb on + strand, within CSW01_18985at 919.297 kb on + strand, within CSW01_18985at 919.300 kb on - strand, within CSW01_18985at 919.310 kb on + strand, within CSW01_18985at 919.310 kb on + strand, within CSW01_18985at 919.318 kb on - strand, within CSW01_18985at 919.318 kb on - strand, within CSW01_18985at 919.333 kb on - strand, within CSW01_18985at 919.345 kb on - strand, within CSW01_18985at 919.407 kb on + strand, within CSW01_18985at 919.415 kb on - strand, within CSW01_18985at 919.417 kb on - strand, within CSW01_18985at 919.422 kb on - strand, within CSW01_18985at 919.423 kb on + strand, within CSW01_18985at 919.474 kb on + strand, within CSW01_18985at 919.551 kb on + strand, within CSW01_18985at 919.582 kb on - strand, within CSW01_18985at 919.615 kb on - strandat 919.615 kb on - strandat 919.622 kb on - strandat 919.629 kb on - strandat 919.666 kb on + strandat 919.674 kb on - strandat 919.711 kb on - strandat 919.999 kb on - strandat 920.003 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.170 kb on + strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.178 kb on - strandat 920.201 kb on + strandat 920.214 kb on - strandat 920.242 kb on + strand, within CSW01_18990at 920.242 kb on + strand, within CSW01_18990at 920.274 kb on - strand, within CSW01_18990at 920.318 kb on - strand, within CSW01_18990at 920.327 kb on + strand, within CSW01_18990at 920.370 kb on - strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.409 kb on + strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.417 kb on - strand, within CSW01_18990at 920.419 kb on + strand, within CSW01_18990at 920.419 kb on + strand, within CSW01_18990at 920.426 kb on + strand, within CSW01_18990at 920.426 kb on + strand, within CSW01_18990at 920.426 kb on + strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.427 kb on - strand, within CSW01_18990at 920.434 kb on - strand, within CSW01_18990at 920.434 kb on - strand, within CSW01_18990at 920.434 kb on - strand, within CSW01_18990at 920.480 kb on - strand, within CSW01_18990at 920.485 kb on - strand, within CSW01_18990at 920.560 kb on - strand, within CSW01_18990at 920.645 kb on - strand, within CSW01_18990at 920.648 kb on + strand, within CSW01_18990at 920.667 kb on + strand, within CSW01_18990at 920.675 kb on - strand, within CSW01_18990at 920.704 kb on - strand, within CSW01_18990at 920.713 kb on + strand, within CSW01_18990at 920.713 kb on + strand, within CSW01_18990at 920.721 kb on - strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.734 kb on + strand, within CSW01_18990at 920.742 kb on - strand, within CSW01_18990at 920.742 kb on - strand, within CSW01_18990

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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917,204 + CSW01_18975 0.53 -0.5
917,204 + CSW01_18975 0.53 +0.4
917,213 - CSW01_18975 0.53 -0.5
917,273 + CSW01_18975 0.58 -1.0
917,474 - CSW01_18975 0.73 -0.3
917,474 - CSW01_18975 0.73 +0.7
917,511 - CSW01_18975 0.76 -3.9
917,518 - CSW01_18975 0.77 -0.5
917,579 + CSW01_18975 0.81 +0.8
917,587 - CSW01_18975 0.82 -0.5
917,637 + CSW01_18975 0.86 +2.0
917,705 - +1.2
917,729 + -0.5
917,729 + -1.0
918,270 - CSW01_18985 0.11 +1.4
918,325 + CSW01_18985 0.14 +0.2
918,365 - CSW01_18985 0.17 +0.0
918,404 + CSW01_18985 0.19 -2.1
918,404 + CSW01_18985 0.19 -0.7
918,420 - CSW01_18985 0.20 -0.5
918,452 - CSW01_18985 0.22 +0.5
918,580 - CSW01_18985 0.29 -0.3
918,593 + CSW01_18985 0.30 +1.7
918,601 - CSW01_18985 0.31 +1.3
918,641 + CSW01_18985 0.33 -3.2
918,656 + CSW01_18985 0.34 +0.7
918,929 + CSW01_18985 0.50 +0.8
918,929 + CSW01_18985 0.50 -2.0
918,929 + CSW01_18985 0.50 +0.9
918,929 + CSW01_18985 0.50 -3.2
918,929 + CSW01_18985 0.50 +0.0
918,929 + CSW01_18985 0.50 +0.0
918,929 + CSW01_18985 0.50 -0.3
918,934 - CSW01_18985 0.50 -1.1
918,937 - CSW01_18985 0.51 +0.7
918,937 - CSW01_18985 0.51 -0.2
918,937 - CSW01_18985 0.51 +0.7
918,937 - CSW01_18985 0.51 +0.3
918,952 + CSW01_18985 0.51 +1.3
918,957 + CSW01_18985 0.52 -1.6
919,159 + CSW01_18985 0.64 -0.5
919,159 + CSW01_18985 0.64 -0.7
919,167 - CSW01_18985 0.64 +0.5
919,167 - CSW01_18985 0.64 -1.1
919,176 + CSW01_18985 0.65 -0.5
919,184 - CSW01_18985 0.65 -0.7
919,195 + CSW01_18985 0.66 +0.1
919,291 + CSW01_18985 0.72 +1.9
919,297 + CSW01_18985 0.72 +1.4
919,300 - CSW01_18985 0.72 -0.2
919,310 + CSW01_18985 0.73 +1.7
919,310 + CSW01_18985 0.73 +1.1
919,318 - CSW01_18985 0.73 +0.1
919,318 - CSW01_18985 0.73 +0.0
919,333 - CSW01_18985 0.74 -0.1
919,345 - CSW01_18985 0.75 -0.2
919,407 + CSW01_18985 0.78 -0.7
919,415 - CSW01_18985 0.79 -1.0
919,417 - CSW01_18985 0.79 -0.4
919,422 - CSW01_18985 0.79 +0.7
919,423 + CSW01_18985 0.79 +0.6
919,474 + CSW01_18985 0.82 +0.3
919,551 + CSW01_18985 0.87 +1.2
919,582 - CSW01_18985 0.89 +0.6
919,615 - -0.1
919,615 - -0.7
919,622 - +0.4
919,629 - +1.3
919,666 + +0.1
919,674 - +0.5
919,711 - +0.1
919,999 - -0.3
920,003 + -0.8
920,170 + -2.7
920,170 + -1.0
920,170 + -0.0
920,170 + +0.0
920,170 + +1.0
920,170 + -1.7
920,170 + +1.9
920,170 + +0.3
920,170 + -0.1
920,170 + +1.7
920,170 + +0.0
920,178 - -2.0
920,178 - -1.6
920,178 - +0.1
920,178 - +0.3
920,178 - -1.7
920,178 - -2.0
920,178 - -0.4
920,178 - -2.7
920,201 + -1.1
920,214 - +0.9
920,242 + CSW01_18990 0.11 +0.0
920,242 + CSW01_18990 0.11 -0.7
920,274 - CSW01_18990 0.12 -1.7
920,318 - CSW01_18990 0.14 +0.5
920,327 + CSW01_18990 0.14 -0.6
920,370 - CSW01_18990 0.16 +0.8
920,409 + CSW01_18990 0.18 -0.8
920,409 + CSW01_18990 0.18 +2.0
920,409 + CSW01_18990 0.18 +0.7
920,409 + CSW01_18990 0.18 -0.8
920,417 - CSW01_18990 0.18 +1.1
920,417 - CSW01_18990 0.18 -1.0
920,417 - CSW01_18990 0.18 -1.9
920,417 - CSW01_18990 0.18 -0.5
920,417 - CSW01_18990 0.18 -0.9
920,419 + CSW01_18990 0.18 -2.9
920,419 + CSW01_18990 0.18 +0.3
920,426 + CSW01_18990 0.19 -1.9
920,426 + CSW01_18990 0.19 +1.0
920,426 + CSW01_18990 0.19 -1.5
920,427 - CSW01_18990 0.19 -0.1
920,427 - CSW01_18990 0.19 -3.0
920,427 - CSW01_18990 0.19 -0.8
920,427 - CSW01_18990 0.19 -0.7
920,427 - CSW01_18990 0.19 -2.0
920,427 - CSW01_18990 0.19 +0.5
920,427 - CSW01_18990 0.19 +0.4
920,427 - CSW01_18990 0.19 +0.8
920,427 - CSW01_18990 0.19 +1.1
920,434 - CSW01_18990 0.19 +0.7
920,434 - CSW01_18990 0.19 +0.7
920,434 - CSW01_18990 0.19 -0.2
920,480 - CSW01_18990 0.21 +0.3
920,485 - CSW01_18990 0.21 +1.2
920,560 - CSW01_18990 0.24 -0.7
920,645 - CSW01_18990 0.28 -0.4
920,648 + CSW01_18990 0.28 -0.6
920,667 + CSW01_18990 0.29 +0.2
920,675 - CSW01_18990 0.29 +2.3
920,704 - CSW01_18990 0.30 +0.6
920,713 + CSW01_18990 0.31 -0.2
920,713 + CSW01_18990 0.31 -1.5
920,721 - CSW01_18990 0.31 -3.7
920,734 + CSW01_18990 0.32 -1.0
920,734 + CSW01_18990 0.32 -1.0
920,734 + CSW01_18990 0.32 +1.1
920,734 + CSW01_18990 0.32 -1.1
920,734 + CSW01_18990 0.32 -0.7
920,734 + CSW01_18990 0.32 -0.4
920,742 - CSW01_18990 0.32 -0.0
920,742 - CSW01_18990 0.32 -1.5

Or see this region's nucleotide sequence