Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18825

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18820 and CSW01_18825 are separated by 118 nucleotidesCSW01_18825 and CSW01_18830 are separated by 151 nucleotides CSW01_18820: CSW01_18820 - EamA/RhaT family transporter, at 887,423 to 888,322 _18820 CSW01_18825: CSW01_18825 - GGDEF domain-containing protein, at 888,441 to 889,406 _18825 CSW01_18830: CSW01_18830 - DeoR/GlpR family transcriptional regulator, at 889,558 to 890,319 _18830 Position (kb) 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 887.558 kb on - strand, within CSW01_18820at 887.569 kb on + strand, within CSW01_18820at 887.569 kb on + strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.589 kb on + strand, within CSW01_18820at 887.675 kb on + strand, within CSW01_18820at 887.811 kb on + strand, within CSW01_18820at 887.819 kb on - strand, within CSW01_18820at 887.880 kb on + strand, within CSW01_18820at 887.880 kb on + strand, within CSW01_18820at 887.888 kb on - strand, within CSW01_18820at 887.888 kb on - strand, within CSW01_18820at 887.890 kb on + strand, within CSW01_18820at 887.902 kb on + strand, within CSW01_18820at 887.909 kb on + strand, within CSW01_18820at 887.910 kb on - strand, within CSW01_18820at 887.917 kb on - strand, within CSW01_18820at 887.917 kb on - strand, within CSW01_18820at 888.006 kb on + strand, within CSW01_18820at 888.014 kb on - strand, within CSW01_18820at 888.095 kb on + strand, within CSW01_18820at 888.103 kb on - strand, within CSW01_18820at 888.429 kb on - strandat 888.463 kb on - strandat 888.604 kb on - strand, within CSW01_18825at 888.624 kb on - strand, within CSW01_18825at 888.808 kb on + strand, within CSW01_18825at 888.809 kb on - strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.821 kb on - strand, within CSW01_18825at 888.821 kb on - strand, within CSW01_18825at 888.877 kb on + strand, within CSW01_18825at 888.980 kb on - strand, within CSW01_18825at 888.999 kb on - strand, within CSW01_18825at 889.064 kb on + strand, within CSW01_18825at 889.233 kb on - strand, within CSW01_18825at 889.254 kb on + strand, within CSW01_18825at 889.273 kb on + strand, within CSW01_18825at 889.273 kb on + strand, within CSW01_18825at 889.281 kb on - strand, within CSW01_18825at 889.346 kb on + strandat 889.346 kb on + strandat 889.346 kb on + strandat 889.346 kb on + strandat 889.346 kb on + strandat 889.354 kb on - strandat 889.354 kb on - strandat 889.354 kb on - strandat 889.354 kb on - strandat 889.354 kb on - strandat 889.401 kb on + strandat 889.401 kb on + strandat 889.409 kb on - strandat 889.532 kb on - strandat 889.602 kb on + strandat 889.694 kb on - strand, within CSW01_18830at 889.747 kb on - strand, within CSW01_18830at 889.813 kb on + strand, within CSW01_18830at 889.990 kb on - strand, within CSW01_18830at 890.025 kb on - strand, within CSW01_18830at 890.125 kb on - strand, within CSW01_18830at 890.125 kb on - strand, within CSW01_18830at 890.127 kb on - strand, within CSW01_18830at 890.208 kb on + strand, within CSW01_18830at 890.216 kb on - strand, within CSW01_18830at 890.246 kb on + strandat 890.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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887,558 - CSW01_18820 0.15 +0.6
887,569 + CSW01_18820 0.16 +1.6
887,569 + CSW01_18820 0.16 -2.1
887,577 - CSW01_18820 0.17 +0.9
887,577 - CSW01_18820 0.17 +0.1
887,577 - CSW01_18820 0.17 +0.2
887,577 - CSW01_18820 0.17 -3.1
887,589 + CSW01_18820 0.18 -1.3
887,675 + CSW01_18820 0.28 +0.7
887,811 + CSW01_18820 0.43 -0.7
887,819 - CSW01_18820 0.44 +2.1
887,880 + CSW01_18820 0.51 -0.6
887,880 + CSW01_18820 0.51 +1.1
887,888 - CSW01_18820 0.52 +0.3
887,888 - CSW01_18820 0.52 +0.1
887,890 + CSW01_18820 0.52 -2.3
887,902 + CSW01_18820 0.53 +1.4
887,909 + CSW01_18820 0.54 -0.0
887,910 - CSW01_18820 0.54 +0.6
887,917 - CSW01_18820 0.55 +0.4
887,917 - CSW01_18820 0.55 -3.1
888,006 + CSW01_18820 0.65 +2.2
888,014 - CSW01_18820 0.66 -1.0
888,095 + CSW01_18820 0.75 -0.9
888,103 - CSW01_18820 0.76 -0.9
888,429 - +1.3
888,463 - -0.1
888,604 - CSW01_18825 0.17 +1.0
888,624 - CSW01_18825 0.19 +1.2
888,808 + CSW01_18825 0.38 +0.0
888,809 - CSW01_18825 0.38 +1.2
888,813 + CSW01_18825 0.39 +0.9
888,813 + CSW01_18825 0.39 +0.4
888,813 + CSW01_18825 0.39 +0.4
888,813 + CSW01_18825 0.39 -2.3
888,813 + CSW01_18825 0.39 -1.3
888,813 + CSW01_18825 0.39 -0.1
888,821 - CSW01_18825 0.39 +0.5
888,821 - CSW01_18825 0.39 +0.1
888,877 + CSW01_18825 0.45 -0.0
888,980 - CSW01_18825 0.56 +0.7
888,999 - CSW01_18825 0.58 +0.9
889,064 + CSW01_18825 0.64 +0.9
889,233 - CSW01_18825 0.82 -0.1
889,254 + CSW01_18825 0.84 +0.1
889,273 + CSW01_18825 0.86 -0.6
889,273 + CSW01_18825 0.86 +0.7
889,281 - CSW01_18825 0.87 +0.4
889,346 + +0.3
889,346 + -2.0
889,346 + +0.2
889,346 + -1.2
889,346 + +2.0
889,354 - +0.5
889,354 - -2.1
889,354 - -1.0
889,354 - +0.6
889,354 - +0.8
889,401 + +1.1
889,401 + -2.2
889,409 - -0.4
889,532 - +1.9
889,602 + -0.9
889,694 - CSW01_18830 0.18 -1.7
889,747 - CSW01_18830 0.25 +1.0
889,813 + CSW01_18830 0.33 +0.2
889,990 - CSW01_18830 0.57 -1.6
890,025 - CSW01_18830 0.61 +1.1
890,125 - CSW01_18830 0.74 -0.1
890,125 - CSW01_18830 0.74 -2.9
890,127 - CSW01_18830 0.75 -0.3
890,208 + CSW01_18830 0.85 -0.6
890,216 - CSW01_18830 0.86 -1.9
890,246 + -1.0
890,249 - -3.4

Or see this region's nucleotide sequence