Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18740 and CSW01_18745 are separated by 165 nucleotides CSW01_18745 and CSW01_18750 are separated by 146 nucleotides
CSW01_18740: CSW01_18740 - acyltransferase, at 870,674 to 871,792
_18740
CSW01_18745: CSW01_18745 - AraC family transcriptional regulator, at 871,958 to 872,566
_18745
CSW01_18750: CSW01_18750 - methyl-accepting chemotaxis protein, at 872,713 to 874,587
_18750
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 871.858 kb on + strand at 871.919 kb on + strand at 871.992 kb on + strand at 872.089 kb on - strand, within CSW01_18745 at 872.113 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.131 kb on - strand, within CSW01_18745 at 872.175 kb on - strand, within CSW01_18745 at 872.201 kb on - strand, within CSW01_18745 at 872.282 kb on + strand, within CSW01_18745 at 872.297 kb on - strand, within CSW01_18745 at 872.322 kb on + strand, within CSW01_18745 at 872.322 kb on + strand, within CSW01_18745 at 872.330 kb on - strand, within CSW01_18745 at 872.330 kb on - strand, within CSW01_18745 at 872.337 kb on + strand, within CSW01_18745 at 872.356 kb on - strand, within CSW01_18745 at 872.377 kb on - strand, within CSW01_18745 at 872.477 kb on + strand, within CSW01_18745 at 872.533 kb on + strand at 872.775 kb on - strand at 872.834 kb on + strand at 872.920 kb on - strand, within CSW01_18750 at 873.184 kb on + strand, within CSW01_18750 at 873.192 kb on + strand, within CSW01_18750 at 873.202 kb on - strand, within CSW01_18750 at 873.210 kb on - strand, within CSW01_18750 at 873.258 kb on + strand, within CSW01_18750 at 873.274 kb on - strand, within CSW01_18750 at 873.285 kb on + strand, within CSW01_18750 at 873.293 kb on + strand, within CSW01_18750 at 873.294 kb on - strand, within CSW01_18750 at 873.418 kb on + strand, within CSW01_18750 at 873.418 kb on + strand, within CSW01_18750 at 873.418 kb on + strand, within CSW01_18750 at 873.418 kb on + strand, within CSW01_18750 at 873.544 kb on + strand, within CSW01_18750 at 873.552 kb on - strand, within CSW01_18750 at 873.552 kb on - strand, within CSW01_18750
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 871,858 + +0.0 871,919 + -0.4 871,992 + +0.8 872,089 - CSW01_18745 0.22 +0.1 872,113 - CSW01_18745 0.25 -2.1 872,131 - CSW01_18745 0.28 -0.1 872,131 - CSW01_18745 0.28 -3.7 872,131 - CSW01_18745 0.28 -0.2 872,131 - CSW01_18745 0.28 +0.3 872,175 - CSW01_18745 0.36 -0.3 872,201 - CSW01_18745 0.40 +1.4 872,282 + CSW01_18745 0.53 +0.9 872,297 - CSW01_18745 0.56 -1.3 872,322 + CSW01_18745 0.60 -0.3 872,322 + CSW01_18745 0.60 -0.2 872,330 - CSW01_18745 0.61 -3.3 872,330 - CSW01_18745 0.61 +0.0 872,337 + CSW01_18745 0.62 -0.2 872,356 - CSW01_18745 0.65 -1.5 872,377 - CSW01_18745 0.69 -0.9 872,477 + CSW01_18745 0.85 +0.0 872,533 + +2.4 872,775 - -0.2 872,834 + +0.1 872,920 - CSW01_18750 0.11 +1.2 873,184 + CSW01_18750 0.25 -2.0 873,192 + CSW01_18750 0.26 -0.2 873,202 - CSW01_18750 0.26 -2.1 873,210 - CSW01_18750 0.27 -0.9 873,258 + CSW01_18750 0.29 +0.4 873,274 - CSW01_18750 0.30 +0.8 873,285 + CSW01_18750 0.31 -0.1 873,293 + CSW01_18750 0.31 -2.8 873,294 - CSW01_18750 0.31 +0.6 873,418 + CSW01_18750 0.38 +0.6 873,418 + CSW01_18750 0.38 -0.5 873,418 + CSW01_18750 0.38 -0.6 873,418 + CSW01_18750 0.38 -0.0 873,544 + CSW01_18750 0.44 -2.8 873,552 - CSW01_18750 0.45 +0.1 873,552 - CSW01_18750 0.45 -0.1
Or see this region's nucleotide sequence