Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18690

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18680 and CSW01_18685 are separated by 24 nucleotidesCSW01_18685 and CSW01_18690 are separated by 23 nucleotidesCSW01_18690 and CSW01_18695 are separated by 256 nucleotides CSW01_18680: CSW01_18680 - heme utilization protein HutZ, at 861,171 to 861,701 _18680 CSW01_18685: CSW01_18685 - heme utilization cystosolic carrier protein HutX, at 861,726 to 862,229 _18685 CSW01_18690: CSW01_18690 - heme anaerobic degradation radical SAM methyltransferase ChuW/HutW, at 862,253 to 863,620 _18690 CSW01_18695: CSW01_18695 - energy transducer TonB, at 863,877 to 864,626 _18695 Position (kb) 862 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 861.273 kb on + strand, within CSW01_18680at 861.297 kb on - strand, within CSW01_18680at 861.306 kb on + strand, within CSW01_18680at 861.518 kb on - strand, within CSW01_18680at 861.591 kb on + strand, within CSW01_18680at 861.638 kb on - strand, within CSW01_18680at 861.667 kb on - strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.759 kb on - strandat 861.759 kb on - strandat 862.131 kb on + strand, within CSW01_18685at 862.300 kb on + strandat 862.302 kb on + strandat 862.305 kb on - strandat 862.305 kb on - strandat 862.320 kb on - strandat 862.351 kb on + strandat 862.359 kb on - strandat 862.361 kb on + strandat 862.375 kb on + strandat 862.411 kb on + strand, within CSW01_18690at 862.411 kb on + strand, within CSW01_18690at 862.419 kb on - strand, within CSW01_18690at 862.514 kb on + strand, within CSW01_18690at 862.670 kb on - strand, within CSW01_18690at 862.684 kb on - strand, within CSW01_18690at 862.714 kb on + strand, within CSW01_18690at 862.840 kb on + strand, within CSW01_18690at 862.847 kb on + strand, within CSW01_18690at 862.884 kb on + strand, within CSW01_18690at 862.940 kb on - strand, within CSW01_18690at 863.059 kb on - strand, within CSW01_18690at 863.082 kb on - strand, within CSW01_18690at 863.090 kb on + strand, within CSW01_18690at 863.097 kb on + strand, within CSW01_18690at 863.122 kb on + strand, within CSW01_18690at 863.125 kb on + strand, within CSW01_18690at 863.202 kb on + strand, within CSW01_18690at 863.226 kb on + strand, within CSW01_18690at 863.229 kb on - strand, within CSW01_18690at 863.250 kb on - strand, within CSW01_18690at 863.286 kb on + strand, within CSW01_18690at 863.294 kb on - strand, within CSW01_18690at 863.294 kb on - strand, within CSW01_18690at 863.555 kb on - strandat 863.733 kb on - strandat 863.891 kb on + strandat 863.895 kb on + strandat 863.917 kb on + strandat 863.976 kb on + strand, within CSW01_18695at 864.136 kb on + strand, within CSW01_18695at 864.143 kb on + strand, within CSW01_18695at 864.206 kb on + strand, within CSW01_18695at 864.294 kb on - strand, within CSW01_18695at 864.316 kb on - strand, within CSW01_18695at 864.380 kb on + strand, within CSW01_18695at 864.427 kb on + strand, within CSW01_18695at 864.532 kb on + strand, within CSW01_18695at 864.540 kb on - strand, within CSW01_18695

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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861,273 + CSW01_18680 0.19 -0.1
861,297 - CSW01_18680 0.24 +1.3
861,306 + CSW01_18680 0.25 -0.3
861,518 - CSW01_18680 0.65 +1.2
861,591 + CSW01_18680 0.79 +0.1
861,638 - CSW01_18680 0.88 +1.2
861,667 - -1.9
861,751 + -0.4
861,751 + -1.3
861,751 + -1.9
861,751 + -3.1
861,751 + +1.2
861,751 + -1.9
861,759 - -3.4
861,759 - -1.9
862,131 + CSW01_18685 0.80 +0.2
862,300 + +0.2
862,302 + -0.8
862,305 - -1.3
862,305 - -1.2
862,320 - -1.8
862,351 + -0.3
862,359 - -0.2
862,361 + -0.2
862,375 + +0.7
862,411 + CSW01_18690 0.12 +1.8
862,411 + CSW01_18690 0.12 +0.1
862,419 - CSW01_18690 0.12 +0.6
862,514 + CSW01_18690 0.19 -2.8
862,670 - CSW01_18690 0.30 +0.5
862,684 - CSW01_18690 0.32 -1.4
862,714 + CSW01_18690 0.34 +0.4
862,840 + CSW01_18690 0.43 -3.1
862,847 + CSW01_18690 0.43 -3.0
862,884 + CSW01_18690 0.46 -0.5
862,940 - CSW01_18690 0.50 +1.5
863,059 - CSW01_18690 0.59 -0.7
863,082 - CSW01_18690 0.61 -0.4
863,090 + CSW01_18690 0.61 -0.6
863,097 + CSW01_18690 0.62 +0.6
863,122 + CSW01_18690 0.64 -2.9
863,125 + CSW01_18690 0.64 +0.7
863,202 + CSW01_18690 0.69 -1.6
863,226 + CSW01_18690 0.71 -0.1
863,229 - CSW01_18690 0.71 -1.3
863,250 - CSW01_18690 0.73 +1.2
863,286 + CSW01_18690 0.76 -1.8
863,294 - CSW01_18690 0.76 -2.1
863,294 - CSW01_18690 0.76 -1.6
863,555 - -0.8
863,733 - -1.0
863,891 + +0.9
863,895 + -0.6
863,917 + -2.1
863,976 + CSW01_18695 0.13 -2.5
864,136 + CSW01_18695 0.35 -2.9
864,143 + CSW01_18695 0.35 -1.7
864,206 + CSW01_18695 0.44 -2.3
864,294 - CSW01_18695 0.56 -1.9
864,316 - CSW01_18695 0.59 +0.2
864,380 + CSW01_18695 0.67 -0.2
864,427 + CSW01_18695 0.73 -0.2
864,532 + CSW01_18695 0.87 -1.1
864,540 - CSW01_18695 0.88 -1.7

Or see this region's nucleotide sequence