Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18650

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18645 and CSW01_18650 overlap by 7 nucleotidesCSW01_18650 and CSW01_18655 are separated by 32 nucleotides CSW01_18645: CSW01_18645 - MBL fold metallo-hydrolase, at 852,648 to 853,562 _18645 CSW01_18650: CSW01_18650 - DsbA family protein, at 853,556 to 854,185 _18650 CSW01_18655: CSW01_18655 - hypothetical protein, at 854,218 to 855,054 _18655 Position (kb) 853 854 855Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 852.560 kb on - strandat 852.633 kb on + strandat 852.729 kb on + strandat 852.737 kb on - strandat 852.737 kb on - strandat 852.749 kb on + strand, within CSW01_18645at 852.749 kb on + strand, within CSW01_18645at 852.752 kb on - strand, within CSW01_18645at 852.757 kb on - strand, within CSW01_18645at 852.757 kb on - strand, within CSW01_18645at 852.770 kb on + strand, within CSW01_18645at 852.782 kb on + strand, within CSW01_18645at 852.790 kb on - strand, within CSW01_18645at 852.871 kb on + strand, within CSW01_18645at 852.890 kb on - strand, within CSW01_18645at 853.135 kb on - strand, within CSW01_18645at 853.245 kb on + strand, within CSW01_18645at 853.283 kb on + strand, within CSW01_18645at 853.309 kb on - strand, within CSW01_18645at 853.311 kb on + strand, within CSW01_18645at 853.314 kb on - strand, within CSW01_18645at 853.459 kb on + strand, within CSW01_18645at 853.461 kb on + strand, within CSW01_18645at 853.557 kb on + strandat 853.590 kb on - strandat 853.652 kb on - strand, within CSW01_18650at 853.655 kb on + strand, within CSW01_18650at 853.663 kb on - strand, within CSW01_18650at 853.685 kb on + strand, within CSW01_18650at 853.703 kb on - strand, within CSW01_18650at 853.765 kb on - strand, within CSW01_18650at 853.834 kb on - strand, within CSW01_18650at 853.876 kb on + strand, within CSW01_18650at 853.900 kb on + strand, within CSW01_18650at 853.911 kb on + strand, within CSW01_18650at 853.911 kb on + strand, within CSW01_18650at 853.919 kb on - strand, within CSW01_18650at 853.919 kb on - strand, within CSW01_18650at 853.919 kb on - strand, within CSW01_18650at 854.035 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.162 kb on + strandat 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.350 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.387 kb on + strand, within CSW01_18655at 854.395 kb on - strand, within CSW01_18655at 854.413 kb on + strand, within CSW01_18655at 854.423 kb on + strand, within CSW01_18655at 854.453 kb on + strand, within CSW01_18655at 854.506 kb on + strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.521 kb on + strand, within CSW01_18655at 854.522 kb on + strand, within CSW01_18655at 854.530 kb on - strand, within CSW01_18655at 854.678 kb on + strand, within CSW01_18655at 854.926 kb on - strand, within CSW01_18655at 854.938 kb on - strand, within CSW01_18655at 855.028 kb on - strandat 855.028 kb on - strandat 855.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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852,560 - -0.0
852,633 + +0.5
852,729 + -0.4
852,737 - +1.8
852,737 - -1.1
852,749 + CSW01_18645 0.11 +0.2
852,749 + CSW01_18645 0.11 +1.8
852,752 - CSW01_18645 0.11 +1.2
852,757 - CSW01_18645 0.12 -1.2
852,757 - CSW01_18645 0.12 -0.5
852,770 + CSW01_18645 0.13 +1.1
852,782 + CSW01_18645 0.15 +0.2
852,790 - CSW01_18645 0.16 +0.9
852,871 + CSW01_18645 0.24 +1.2
852,890 - CSW01_18645 0.26 +0.3
853,135 - CSW01_18645 0.53 -0.3
853,245 + CSW01_18645 0.65 +1.7
853,283 + CSW01_18645 0.69 +0.5
853,309 - CSW01_18645 0.72 +0.3
853,311 + CSW01_18645 0.72 -1.9
853,314 - CSW01_18645 0.73 -0.9
853,459 + CSW01_18645 0.89 -0.3
853,461 + CSW01_18645 0.89 +0.8
853,557 + +2.3
853,590 - +0.3
853,652 - CSW01_18650 0.15 -2.1
853,655 + CSW01_18650 0.16 -0.1
853,663 - CSW01_18650 0.17 -0.2
853,685 + CSW01_18650 0.20 -0.3
853,703 - CSW01_18650 0.23 +1.6
853,765 - CSW01_18650 0.33 +1.0
853,834 - CSW01_18650 0.44 -1.3
853,876 + CSW01_18650 0.51 +0.3
853,900 + CSW01_18650 0.55 -0.3
853,911 + CSW01_18650 0.56 -1.7
853,911 + CSW01_18650 0.56 -0.9
853,919 - CSW01_18650 0.58 -0.1
853,919 - CSW01_18650 0.58 -2.6
853,919 - CSW01_18650 0.58 -1.3
854,035 - CSW01_18650 0.76 +0.1
854,117 - CSW01_18650 0.89 -2.6
854,117 - CSW01_18650 0.89 +2.8
854,117 - CSW01_18650 0.89 +0.0
854,117 - CSW01_18650 0.89 +0.0
854,162 + +0.5
854,318 + CSW01_18655 0.12 -1.2
854,318 + CSW01_18655 0.12 +1.2
854,318 + CSW01_18655 0.12 -1.6
854,318 + CSW01_18655 0.12 -0.8
854,318 + CSW01_18655 0.12 -2.6
854,318 + CSW01_18655 0.12 +0.9
854,318 + CSW01_18655 0.12 -2.6
854,318 + CSW01_18655 0.12 -2.3
854,318 + CSW01_18655 0.12 +2.0
854,318 + CSW01_18655 0.12 +0.5
854,326 - CSW01_18655 0.13 -0.2
854,326 - CSW01_18655 0.13 +1.3
854,326 - CSW01_18655 0.13 +0.9
854,326 - CSW01_18655 0.13 +0.8
854,326 - CSW01_18655 0.13 +1.5
854,326 - CSW01_18655 0.13 +0.3
854,326 - CSW01_18655 0.13 +1.0
854,326 - CSW01_18655 0.13 +0.7
854,326 - CSW01_18655 0.13 +1.4
854,326 - CSW01_18655 0.13 -1.4
854,326 - CSW01_18655 0.13 +1.1
854,326 - CSW01_18655 0.13 +1.2
854,350 + CSW01_18655 0.16 -1.4
854,382 + CSW01_18655 0.20 +0.9
854,382 + CSW01_18655 0.20 -4.4
854,387 + CSW01_18655 0.20 -0.9
854,395 - CSW01_18655 0.21 -0.3
854,413 + CSW01_18655 0.23 +1.7
854,423 + CSW01_18655 0.24 -2.2
854,453 + CSW01_18655 0.28 -1.7
854,506 + CSW01_18655 0.34 +0.3
854,514 - CSW01_18655 0.35 -2.9
854,514 - CSW01_18655 0.35 -0.1
854,521 + CSW01_18655 0.36 -1.1
854,522 + CSW01_18655 0.36 -0.2
854,530 - CSW01_18655 0.37 +0.3
854,678 + CSW01_18655 0.55 -2.9
854,926 - CSW01_18655 0.85 -0.8
854,938 - CSW01_18655 0.86 -1.6
855,028 - +0.1
855,028 - -1.3
855,119 - -1.7

Or see this region's nucleotide sequence