Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18625 and CSW01_18630 overlap by 4 nucleotides CSW01_18630 and CSW01_18635 are separated by 13 nucleotides
CSW01_18625: CSW01_18625 - glucose-6-phosphate dehydrogenase, at 848,407 to 849,912
_18625
CSW01_18630: CSW01_18630 - 6-phosphogluconolactonase, at 849,909 to 850,625
_18630
CSW01_18635: CSW01_18635 - phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating), at 850,639 to 852,087
_18635
Position (kb) 849
850
851 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 848.945 kb on + strand, within CSW01_18625 at 848.996 kb on - strand, within CSW01_18625 at 849.077 kb on + strand, within CSW01_18625 at 849.077 kb on + strand, within CSW01_18625 at 849.085 kb on - strand, within CSW01_18625 at 849.085 kb on - strand, within CSW01_18625 at 849.233 kb on + strand, within CSW01_18625 at 849.241 kb on - strand, within CSW01_18625 at 849.241 kb on - strand, within CSW01_18625 at 849.241 kb on - strand, within CSW01_18625 at 849.326 kb on + strand, within CSW01_18625 at 849.429 kb on + strand, within CSW01_18625 at 849.558 kb on - strand, within CSW01_18625 at 849.569 kb on + strand, within CSW01_18625 at 849.585 kb on + strand, within CSW01_18625 at 849.638 kb on + strand, within CSW01_18625 at 849.640 kb on + strand, within CSW01_18625 at 849.656 kb on - strand, within CSW01_18625 at 849.656 kb on - strand, within CSW01_18625 at 849.709 kb on + strand, within CSW01_18625 at 849.717 kb on - strand, within CSW01_18625 at 849.717 kb on - strand, within CSW01_18625 at 849.720 kb on + strand, within CSW01_18625 at 849.982 kb on - strand, within CSW01_18630 at 850.061 kb on + strand, within CSW01_18630 at 850.118 kb on - strand, within CSW01_18630 at 850.120 kb on + strand, within CSW01_18630 at 850.126 kb on - strand, within CSW01_18630 at 850.235 kb on + strand, within CSW01_18630 at 850.309 kb on + strand, within CSW01_18630 at 850.335 kb on - strand, within CSW01_18630 at 850.344 kb on + strand, within CSW01_18630 at 850.498 kb on - strand, within CSW01_18630 at 850.544 kb on - strand, within CSW01_18630 at 850.570 kb on + strand at 850.578 kb on - strand at 850.604 kb on - strand at 850.653 kb on - strand at 850.731 kb on + strand at 850.734 kb on - strand at 850.807 kb on + strand, within CSW01_18635 at 850.875 kb on - strand, within CSW01_18635 at 851.028 kb on + strand, within CSW01_18635 at 851.074 kb on + strand, within CSW01_18635 at 851.144 kb on + strand, within CSW01_18635 at 851.147 kb on - strand, within CSW01_18635 at 851.178 kb on - strand, within CSW01_18635 at 851.209 kb on - strand, within CSW01_18635 at 851.223 kb on + strand, within CSW01_18635 at 851.314 kb on + strand, within CSW01_18635 at 851.609 kb on - strand, within CSW01_18635
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 848,945 + CSW01_18625 0.36 -3.0 848,996 - CSW01_18625 0.39 -1.1 849,077 + CSW01_18625 0.44 -2.2 849,077 + CSW01_18625 0.44 -1.0 849,085 - CSW01_18625 0.45 -1.8 849,085 - CSW01_18625 0.45 -0.6 849,233 + CSW01_18625 0.55 +0.9 849,241 - CSW01_18625 0.55 -2.0 849,241 - CSW01_18625 0.55 +0.9 849,241 - CSW01_18625 0.55 -2.9 849,326 + CSW01_18625 0.61 -2.6 849,429 + CSW01_18625 0.68 -1.3 849,558 - CSW01_18625 0.76 +1.2 849,569 + CSW01_18625 0.77 +0.9 849,585 + CSW01_18625 0.78 +0.2 849,638 + CSW01_18625 0.82 -2.4 849,640 + CSW01_18625 0.82 -4.0 849,656 - CSW01_18625 0.83 +0.3 849,656 - CSW01_18625 0.83 -1.3 849,709 + CSW01_18625 0.86 +1.0 849,717 - CSW01_18625 0.87 +0.1 849,717 - CSW01_18625 0.87 +0.3 849,720 + CSW01_18625 0.87 +0.1 849,982 - CSW01_18630 0.10 +1.1 850,061 + CSW01_18630 0.21 -1.4 850,118 - CSW01_18630 0.29 +0.9 850,120 + CSW01_18630 0.29 -2.4 850,126 - CSW01_18630 0.30 -0.7 850,235 + CSW01_18630 0.45 -2.5 850,309 + CSW01_18630 0.56 +1.8 850,335 - CSW01_18630 0.59 -1.4 850,344 + CSW01_18630 0.61 -1.1 850,498 - CSW01_18630 0.82 +1.7 850,544 - CSW01_18630 0.89 +0.1 850,570 + -0.1 850,578 - -1.9 850,604 - +0.6 850,653 - -1.2 850,731 + -2.0 850,734 - -1.0 850,807 + CSW01_18635 0.12 -0.9 850,875 - CSW01_18635 0.16 -0.3 851,028 + CSW01_18635 0.27 -2.4 851,074 + CSW01_18635 0.30 -1.8 851,144 + CSW01_18635 0.35 -0.8 851,147 - CSW01_18635 0.35 -1.9 851,178 - CSW01_18635 0.37 -3.7 851,209 - CSW01_18635 0.39 -0.8 851,223 + CSW01_18635 0.40 -2.9 851,314 + CSW01_18635 0.47 -1.1 851,609 - CSW01_18635 0.67 +0.8
Or see this region's nucleotide sequence