Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18435

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18430 and CSW01_18435 overlap by 11 nucleotidesCSW01_18435 and CSW01_18440 are separated by 359 nucleotides CSW01_18430: CSW01_18430 - alpha-amylase, at 807,455 to 809,527 _18430 CSW01_18435: CSW01_18435 - hypothetical protein, at 809,517 to 809,702 _18435 CSW01_18440: CSW01_18440 - long-chain fatty acid transporter, at 810,062 to 811,300 _18440 Position (kb) 809 810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 808.571 kb on + strand, within CSW01_18430at 808.616 kb on + strand, within CSW01_18430at 808.617 kb on + strand, within CSW01_18430at 808.622 kb on + strand, within CSW01_18430at 808.624 kb on - strand, within CSW01_18430at 808.658 kb on - strand, within CSW01_18430at 808.658 kb on - strand, within CSW01_18430at 808.660 kb on + strand, within CSW01_18430at 808.712 kb on + strand, within CSW01_18430at 808.733 kb on - strand, within CSW01_18430at 808.791 kb on - strand, within CSW01_18430at 808.791 kb on - strand, within CSW01_18430at 808.791 kb on - strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.916 kb on + strand, within CSW01_18430at 808.923 kb on + strand, within CSW01_18430at 808.931 kb on - strand, within CSW01_18430at 808.966 kb on - strand, within CSW01_18430at 809.024 kb on - strand, within CSW01_18430at 809.024 kb on - strand, within CSW01_18430at 809.093 kb on - strand, within CSW01_18430at 809.146 kb on + strand, within CSW01_18430at 809.167 kb on - strand, within CSW01_18430at 809.178 kb on + strand, within CSW01_18430at 809.208 kb on - strand, within CSW01_18430at 809.232 kb on + strand, within CSW01_18430at 809.242 kb on + strand, within CSW01_18430at 809.250 kb on - strand, within CSW01_18430at 809.267 kb on + strand, within CSW01_18430at 809.295 kb on + strand, within CSW01_18430at 809.339 kb on + strandat 809.347 kb on - strandat 809.347 kb on - strandat 809.367 kb on + strandat 809.383 kb on - strandat 809.394 kb on + strandat 809.430 kb on + strandat 809.433 kb on + strandat 809.441 kb on - strandat 809.548 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.815 kb on + strandat 809.844 kb on - strandat 809.909 kb on - strandat 809.947 kb on + strandat 809.969 kb on - strandat 809.969 kb on - strandat 810.067 kb on + strandat 810.093 kb on + strandat 810.093 kb on + strandat 810.115 kb on + strandat 810.123 kb on - strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.166 kb on - strandat 810.166 kb on - strandat 810.166 kb on - strandat 810.259 kb on - strand, within CSW01_18440at 810.336 kb on - strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.460 kb on + strand, within CSW01_18440at 810.484 kb on - strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.505 kb on + strand, within CSW01_18440at 810.530 kb on + strand, within CSW01_18440at 810.533 kb on - strand, within CSW01_18440at 810.538 kb on - strand, within CSW01_18440at 810.586 kb on + strand, within CSW01_18440at 810.586 kb on + strand, within CSW01_18440at 810.601 kb on - strand, within CSW01_18440at 810.660 kb on + strand, within CSW01_18440

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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808,571 + CSW01_18430 0.54 -2.6
808,616 + CSW01_18430 0.56 +0.3
808,617 + CSW01_18430 0.56 -0.1
808,622 + CSW01_18430 0.56 -1.5
808,624 - CSW01_18430 0.56 -0.8
808,658 - CSW01_18430 0.58 -0.1
808,658 - CSW01_18430 0.58 +0.2
808,660 + CSW01_18430 0.58 +0.2
808,712 + CSW01_18430 0.61 -0.3
808,733 - CSW01_18430 0.62 -1.2
808,791 - CSW01_18430 0.64 +0.6
808,791 - CSW01_18430 0.64 +0.5
808,791 - CSW01_18430 0.64 -0.4
808,899 + CSW01_18430 0.70 -2.8
808,899 + CSW01_18430 0.70 -1.3
808,899 + CSW01_18430 0.70 -0.7
808,899 + CSW01_18430 0.70 -1.0
808,899 + CSW01_18430 0.70 -1.2
808,899 + CSW01_18430 0.70 +1.3
808,907 - CSW01_18430 0.70 -1.5
808,907 - CSW01_18430 0.70 +0.6
808,907 - CSW01_18430 0.70 -3.1
808,907 - CSW01_18430 0.70 -3.5
808,907 - CSW01_18430 0.70 -0.1
808,907 - CSW01_18430 0.70 +0.1
808,907 - CSW01_18430 0.70 -0.9
808,916 + CSW01_18430 0.70 -1.7
808,923 + CSW01_18430 0.71 +2.6
808,931 - CSW01_18430 0.71 -1.3
808,966 - CSW01_18430 0.73 -0.3
809,024 - CSW01_18430 0.76 -0.9
809,024 - CSW01_18430 0.76 +0.7
809,093 - CSW01_18430 0.79 -2.6
809,146 + CSW01_18430 0.82 +1.6
809,167 - CSW01_18430 0.83 -0.9
809,178 + CSW01_18430 0.83 -0.1
809,208 - CSW01_18430 0.85 -1.9
809,232 + CSW01_18430 0.86 -0.1
809,242 + CSW01_18430 0.86 +0.5
809,250 - CSW01_18430 0.87 -0.7
809,267 + CSW01_18430 0.87 -0.8
809,295 + CSW01_18430 0.89 +1.6
809,339 + +0.9
809,347 - -0.8
809,347 - -2.5
809,367 + -0.5
809,383 - +0.7
809,394 + -0.5
809,430 + -3.1
809,433 + +0.5
809,441 - -1.1
809,548 - CSW01_18435 0.17 +0.7
809,601 - CSW01_18435 0.45 -0.1
809,601 - CSW01_18435 0.45 -0.2
809,601 - CSW01_18435 0.45 +0.3
809,601 - CSW01_18435 0.45 +0.6
809,815 + -0.7
809,844 - +0.3
809,909 - -0.1
809,947 + +0.3
809,969 - +2.0
809,969 - +1.4
810,067 + +0.7
810,093 + +1.5
810,093 + +2.0
810,115 + -1.4
810,123 - +0.2
810,158 + +0.9
810,158 + -0.9
810,158 + -3.6
810,158 + +0.0
810,166 - -0.6
810,166 - +0.7
810,166 - -1.9
810,259 - CSW01_18440 0.16 -0.6
810,336 - CSW01_18440 0.22 -0.2
810,409 + CSW01_18440 0.28 +1.0
810,409 + CSW01_18440 0.28 +0.8
810,409 + CSW01_18440 0.28 +2.1
810,448 + CSW01_18440 0.31 -1.8
810,448 + CSW01_18440 0.31 +0.6
810,460 + CSW01_18440 0.32 -1.2
810,484 - CSW01_18440 0.34 -0.7
810,495 + CSW01_18440 0.35 +0.3
810,495 + CSW01_18440 0.35 -0.7
810,505 + CSW01_18440 0.36 +2.0
810,530 + CSW01_18440 0.38 +0.3
810,533 - CSW01_18440 0.38 +0.5
810,538 - CSW01_18440 0.38 -0.5
810,586 + CSW01_18440 0.42 -0.1
810,586 + CSW01_18440 0.42 -1.7
810,601 - CSW01_18440 0.44 +0.4
810,660 + CSW01_18440 0.48 -0.3

Or see this region's nucleotide sequence