Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18405

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18395 and CSW01_18400 are separated by 4 nucleotidesCSW01_18400 and CSW01_18405 overlap by 8 nucleotidesCSW01_18405 and CSW01_18410 overlap by 13 nucleotidesCSW01_18410 and CSW01_18415 are separated by 8 nucleotides CSW01_18395: CSW01_18395 - hypothetical protein, at 801,332 to 802,576 _18395 CSW01_18400: CSW01_18400 - outer membrane lipoprotein-sorting protein, at 802,581 to 803,324 _18400 CSW01_18405: CSW01_18405 - ABC transporter permease, at 803,317 to 804,576 _18405 CSW01_18410: CSW01_18410 - ABC transporter ATP-binding protein, at 804,564 to 805,247 _18410 CSW01_18415: CSW01_18415 - hypothetical protein, at 805,256 to 805,927 _18415 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 802.337 kb on - strand, within CSW01_18395at 802.344 kb on + strand, within CSW01_18395at 802.362 kb on - strand, within CSW01_18395at 802.368 kb on + strand, within CSW01_18395at 802.528 kb on + strandat 802.535 kb on + strandat 802.541 kb on - strandat 802.571 kb on + strandat 802.579 kb on - strandat 802.639 kb on + strandat 802.639 kb on + strandat 802.639 kb on + strandat 802.647 kb on - strandat 802.647 kb on - strandat 802.747 kb on + strand, within CSW01_18400at 802.747 kb on + strand, within CSW01_18400at 802.778 kb on + strand, within CSW01_18400at 802.807 kb on + strand, within CSW01_18400at 802.814 kb on + strand, within CSW01_18400at 802.822 kb on - strand, within CSW01_18400at 802.829 kb on + strand, within CSW01_18400at 802.887 kb on + strand, within CSW01_18400at 802.928 kb on - strand, within CSW01_18400at 802.945 kb on + strand, within CSW01_18400at 802.945 kb on + strand, within CSW01_18400at 802.953 kb on - strand, within CSW01_18400at 802.953 kb on - strand, within CSW01_18400at 803.011 kb on - strand, within CSW01_18400at 803.012 kb on + strand, within CSW01_18400at 803.092 kb on + strand, within CSW01_18400at 803.191 kb on - strand, within CSW01_18400at 803.245 kb on - strand, within CSW01_18400at 803.245 kb on - strand, within CSW01_18400at 803.250 kb on - strandat 803.252 kb on + strandat 803.252 kb on + strandat 803.264 kb on - strandat 803.293 kb on - strandat 803.293 kb on - strandat 803.366 kb on + strandat 803.377 kb on - strandat 803.379 kb on - strandat 803.392 kb on + strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.402 kb on + strandat 803.405 kb on - strandat 803.417 kb on + strandat 803.493 kb on - strand, within CSW01_18405at 803.539 kb on + strand, within CSW01_18405at 803.545 kb on - strand, within CSW01_18405at 803.545 kb on - strand, within CSW01_18405at 803.547 kb on - strand, within CSW01_18405at 803.549 kb on + strand, within CSW01_18405at 803.638 kb on - strand, within CSW01_18405at 803.671 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.672 kb on + strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.680 kb on - strand, within CSW01_18405at 803.809 kb on + strand, within CSW01_18405at 803.847 kb on - strand, within CSW01_18405at 803.855 kb on + strand, within CSW01_18405at 803.864 kb on + strand, within CSW01_18405at 803.896 kb on - strand, within CSW01_18405at 803.911 kb on - strand, within CSW01_18405at 803.913 kb on + strand, within CSW01_18405at 804.026 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.063 kb on + strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.071 kb on - strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.145 kb on + strand, within CSW01_18405at 804.162 kb on + strand, within CSW01_18405at 804.239 kb on + strand, within CSW01_18405at 804.257 kb on - strand, within CSW01_18405at 804.327 kb on + strand, within CSW01_18405at 804.352 kb on + strand, within CSW01_18405at 804.452 kb on - strandat 804.501 kb on + strandat 804.640 kb on - strand, within CSW01_18410at 804.645 kb on - strand, within CSW01_18410at 804.740 kb on - strand, within CSW01_18410at 804.884 kb on + strand, within CSW01_18410at 804.899 kb on + strand, within CSW01_18410at 805.001 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.024 kb on + strand, within CSW01_18410at 805.032 kb on - strand, within CSW01_18410at 805.124 kb on + strand, within CSW01_18410at 805.132 kb on + strand, within CSW01_18410at 805.140 kb on - strand, within CSW01_18410at 805.149 kb on + strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.181 kb on - strandat 805.182 kb on + strandat 805.182 kb on + strandat 805.187 kb on + strandat 805.190 kb on - strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.274 kb on + strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.337 kb on - strand, within CSW01_18415at 805.383 kb on - strand, within CSW01_18415at 805.464 kb on - strand, within CSW01_18415at 805.561 kb on + strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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802,337 - CSW01_18395 0.81 -0.2
802,344 + CSW01_18395 0.81 -0.9
802,362 - CSW01_18395 0.83 -1.5
802,368 + CSW01_18395 0.83 +1.2
802,528 + +2.2
802,535 + +0.6
802,541 - +2.1
802,571 + -0.5
802,579 - +0.0
802,639 + +0.4
802,639 + -2.5
802,639 + -2.4
802,647 - +1.1
802,647 - -0.1
802,747 + CSW01_18400 0.22 +0.1
802,747 + CSW01_18400 0.22 -1.9
802,778 + CSW01_18400 0.26 +1.5
802,807 + CSW01_18400 0.30 -0.3
802,814 + CSW01_18400 0.31 +0.1
802,822 - CSW01_18400 0.32 -1.3
802,829 + CSW01_18400 0.33 +1.7
802,887 + CSW01_18400 0.41 +0.8
802,928 - CSW01_18400 0.47 -2.7
802,945 + CSW01_18400 0.49 +0.2
802,945 + CSW01_18400 0.49 -1.3
802,953 - CSW01_18400 0.50 -1.5
802,953 - CSW01_18400 0.50 -1.9
803,011 - CSW01_18400 0.58 -1.2
803,012 + CSW01_18400 0.58 +0.1
803,092 + CSW01_18400 0.69 -1.2
803,191 - CSW01_18400 0.82 -1.1
803,245 - CSW01_18400 0.89 +2.2
803,245 - CSW01_18400 0.89 +0.0
803,250 - -2.8
803,252 + +0.3
803,252 + -0.2
803,264 - +0.8
803,293 - -3.3
803,293 - -0.1
803,366 + +0.8
803,377 - +1.3
803,379 - +1.1
803,392 + +0.0
803,400 - +1.5
803,400 - +0.2
803,400 - -0.2
803,400 - +0.9
803,402 + +1.6
803,405 - -0.0
803,417 + +0.8
803,493 - CSW01_18405 0.14 -0.2
803,539 + CSW01_18405 0.18 +0.4
803,545 - CSW01_18405 0.18 +0.3
803,545 - CSW01_18405 0.18 -0.7
803,547 - CSW01_18405 0.18 -3.0
803,549 + CSW01_18405 0.18 -1.3
803,638 - CSW01_18405 0.25 -2.3
803,671 + CSW01_18405 0.28 -0.1
803,672 + CSW01_18405 0.28 -1.6
803,672 + CSW01_18405 0.28 -0.4
803,672 + CSW01_18405 0.28 -2.6
803,672 + CSW01_18405 0.28 -0.7
803,672 + CSW01_18405 0.28 -0.7
803,680 - CSW01_18405 0.29 -1.4
803,680 - CSW01_18405 0.29 -2.0
803,680 - CSW01_18405 0.29 -1.3
803,680 - CSW01_18405 0.29 -2.6
803,680 - CSW01_18405 0.29 +2.6
803,680 - CSW01_18405 0.29 -2.0
803,680 - CSW01_18405 0.29 -1.8
803,809 + CSW01_18405 0.39 -0.1
803,847 - CSW01_18405 0.42 -0.0
803,855 + CSW01_18405 0.43 -2.1
803,864 + CSW01_18405 0.43 -3.5
803,896 - CSW01_18405 0.46 -1.6
803,911 - CSW01_18405 0.47 +0.9
803,913 + CSW01_18405 0.47 +0.5
804,026 + CSW01_18405 0.56 -0.8
804,063 + CSW01_18405 0.59 +0.1
804,063 + CSW01_18405 0.59 +0.0
804,063 + CSW01_18405 0.59 +0.3
804,063 + CSW01_18405 0.59 -1.8
804,063 + CSW01_18405 0.59 +0.8
804,071 - CSW01_18405 0.60 +1.2
804,071 - CSW01_18405 0.60 +1.6
804,071 - CSW01_18405 0.60 -0.7
804,071 - CSW01_18405 0.60 +0.9
804,145 + CSW01_18405 0.66 -2.9
804,145 + CSW01_18405 0.66 -1.4
804,145 + CSW01_18405 0.66 -0.6
804,162 + CSW01_18405 0.67 -2.8
804,239 + CSW01_18405 0.73 -1.2
804,257 - CSW01_18405 0.75 +1.0
804,327 + CSW01_18405 0.80 -2.6
804,352 + CSW01_18405 0.82 +0.0
804,452 - +0.6
804,501 + +1.2
804,640 - CSW01_18410 0.11 -1.6
804,645 - CSW01_18410 0.12 +1.5
804,740 - CSW01_18410 0.26 +1.1
804,884 + CSW01_18410 0.47 +3.2
804,899 + CSW01_18410 0.49 -0.3
805,001 + CSW01_18410 0.64 -0.3
805,024 + CSW01_18410 0.67 +0.9
805,024 + CSW01_18410 0.67 +0.4
805,024 + CSW01_18410 0.67 -1.8
805,032 - CSW01_18410 0.68 -3.0
805,124 + CSW01_18410 0.82 -2.0
805,132 + CSW01_18410 0.83 +0.4
805,140 - CSW01_18410 0.84 +0.6
805,149 + CSW01_18410 0.86 -0.3
805,157 - CSW01_18410 0.87 +0.0
805,157 - CSW01_18410 0.87 -1.5
805,163 + CSW01_18410 0.88 +2.2
805,163 + CSW01_18410 0.88 +0.9
805,163 + CSW01_18410 0.88 +0.4
805,181 - +0.9
805,182 + -0.5
805,182 + +0.6
805,187 + -1.4
805,190 - +1.2
805,253 + +1.0
805,253 + +1.4
805,253 + +0.3
805,274 + +0.8
805,282 - +0.1
805,282 - -2.1
805,282 - -2.0
805,337 - CSW01_18415 0.12 +1.6
805,383 - CSW01_18415 0.19 +0.2
805,464 - CSW01_18415 0.31 -0.3
805,561 + CSW01_18415 0.45 -2.0
805,569 - CSW01_18415 0.47 -2.4
805,569 - CSW01_18415 0.47 +0.4

Or see this region's nucleotide sequence