Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18365

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18355 and CSW01_18360 are separated by 300 nucleotidesCSW01_18360 and CSW01_18365 are separated by 48 nucleotidesCSW01_18365 and CSW01_18370 are separated by 185 nucleotides CSW01_18355: CSW01_18355 - aldehyde dehydrogenase, at 783,914 to 785,443 _18355 CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968 _18360 CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631 _18365 CSW01_18370: CSW01_18370 - L-methionine/branched-chain amino acid transporter, at 786,817 to 788,061 _18370 Position (kb) 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 785.025 kb on + strand, within CSW01_18355at 785.033 kb on - strand, within CSW01_18355at 785.121 kb on + strand, within CSW01_18355at 785.164 kb on + strand, within CSW01_18355at 785.164 kb on + strand, within CSW01_18355at 785.175 kb on + strand, within CSW01_18355at 785.317 kb on - strandat 785.384 kb on + strandat 785.384 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.407 kb on - strandat 785.412 kb on - strandat 785.424 kb on - strandat 785.452 kb on + strandat 785.460 kb on - strandat 785.462 kb on + strandat 785.490 kb on - strandat 785.492 kb on - strandat 785.537 kb on + strandat 785.578 kb on + strandat 785.578 kb on + strandat 785.586 kb on - strandat 785.718 kb on - strandat 785.763 kb on + strandat 785.770 kb on - strand, within CSW01_18360at 785.786 kb on - strand, within CSW01_18360at 785.793 kb on + strand, within CSW01_18360at 785.984 kb on + strandat 785.991 kb on - strandat 785.991 kb on - strandat 785.995 kb on + strandat 786.003 kb on - strandat 786.003 kb on - strandat 786.014 kb on + strandat 786.014 kb on + strandat 786.022 kb on - strandat 786.060 kb on + strandat 786.131 kb on - strand, within CSW01_18365at 786.240 kb on + strand, within CSW01_18365at 786.301 kb on + strand, within CSW01_18365at 786.411 kb on + strand, within CSW01_18365at 786.419 kb on + strand, within CSW01_18365at 786.464 kb on + strand, within CSW01_18365at 786.566 kb on - strand, within CSW01_18365at 786.884 kb on + strandat 786.944 kb on + strand, within CSW01_18370at 786.982 kb on + strand, within CSW01_18370at 786.982 kb on + strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 787.052 kb on + strand, within CSW01_18370at 787.088 kb on - strand, within CSW01_18370at 787.126 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.155 kb on - strand, within CSW01_18370at 787.168 kb on + strand, within CSW01_18370at 787.346 kb on + strand, within CSW01_18370at 787.420 kb on - strand, within CSW01_18370at 787.542 kb on - strand, within CSW01_18370at 787.556 kb on - strand, within CSW01_18370at 787.592 kb on + strand, within CSW01_18370at 787.594 kb on + strand, within CSW01_18370at 787.594 kb on + strand, within CSW01_18370at 787.621 kb on + strand, within CSW01_18370at 787.621 kb on + strand, within CSW01_18370

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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785,025 + CSW01_18355 0.73 -0.6
785,033 - CSW01_18355 0.73 +0.3
785,121 + CSW01_18355 0.79 -1.2
785,164 + CSW01_18355 0.82 +0.7
785,164 + CSW01_18355 0.82 -1.8
785,175 + CSW01_18355 0.82 -1.9
785,317 - -0.8
785,384 + +0.6
785,384 + -0.4
785,404 + -2.3
785,404 + -0.5
785,404 + +0.3
785,404 + +0.1
785,407 - +1.0
785,412 - +0.6
785,424 - +0.9
785,452 + -0.8
785,460 - +1.6
785,462 + -1.6
785,490 - +0.5
785,492 - -1.1
785,537 + +1.1
785,578 + +0.2
785,578 + -1.1
785,586 - -0.6
785,718 - -0.5
785,763 + +0.2
785,770 - CSW01_18360 0.12 +0.3
785,786 - CSW01_18360 0.19 -2.1
785,793 + CSW01_18360 0.22 +0.8
785,984 + -2.4
785,991 - +1.5
785,991 - +1.7
785,995 + -0.2
786,003 - +1.5
786,003 - -0.6
786,014 + +1.9
786,014 + -0.1
786,022 - -0.4
786,060 + +0.2
786,131 - CSW01_18365 0.19 +0.1
786,240 + CSW01_18365 0.36 +0.8
786,301 + CSW01_18365 0.46 -3.1
786,411 + CSW01_18365 0.64 -1.0
786,419 + CSW01_18365 0.65 -1.6
786,464 + CSW01_18365 0.73 -1.8
786,566 - CSW01_18365 0.89 +0.3
786,884 + -1.3
786,944 + CSW01_18370 0.10 -2.3
786,982 + CSW01_18370 0.13 -3.3
786,982 + CSW01_18370 0.13 +0.8
786,990 - CSW01_18370 0.14 -1.3
786,990 - CSW01_18370 0.14 -0.1
786,990 - CSW01_18370 0.14 +0.6
786,990 - CSW01_18370 0.14 +0.4
786,990 - CSW01_18370 0.14 +1.7
787,052 + CSW01_18370 0.19 +0.8
787,088 - CSW01_18370 0.22 +0.2
787,126 + CSW01_18370 0.25 -2.4
787,153 + CSW01_18370 0.27 +0.2
787,153 + CSW01_18370 0.27 -3.1
787,153 + CSW01_18370 0.27 +1.2
787,155 - CSW01_18370 0.27 +0.1
787,168 + CSW01_18370 0.28 +0.3
787,346 + CSW01_18370 0.42 +0.6
787,420 - CSW01_18370 0.48 +0.2
787,542 - CSW01_18370 0.58 +0.7
787,556 - CSW01_18370 0.59 +0.3
787,592 + CSW01_18370 0.62 +2.4
787,594 + CSW01_18370 0.62 +0.6
787,594 + CSW01_18370 0.62 +2.2
787,621 + CSW01_18370 0.65 -0.5
787,621 + CSW01_18370 0.65 +0.8

Or see this region's nucleotide sequence