Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18155 and CSW01_18160 are separated by 138 nucleotides CSW01_18160 and CSW01_18165 are separated by 321 nucleotides CSW01_18165 and CSW01_18170 are separated by 118 nucleotides
CSW01_18155: CSW01_18155 - HAD family hydrolase, at 737,846 to 738,526
_18155
CSW01_18160: CSW01_18160 - hypothetical protein, at 738,665 to 739,171
_18160
CSW01_18165: CSW01_18165 - hypothetical protein, at 739,493 to 739,975
_18165
CSW01_18170: CSW01_18170 - inosine/guanosine kinase, at 740,094 to 741,398
_18170
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 737.773 kb on + strand at 737.882 kb on - strand at 737.896 kb on + strand at 737.959 kb on + strand, within CSW01_18155 at 737.959 kb on + strand, within CSW01_18155 at 737.989 kb on - strand, within CSW01_18155 at 738.136 kb on + strand, within CSW01_18155 at 738.141 kb on + strand, within CSW01_18155 at 738.224 kb on - strand, within CSW01_18155 at 738.312 kb on - strand, within CSW01_18155 at 738.407 kb on + strand, within CSW01_18155 at 738.455 kb on + strand, within CSW01_18155 at 738.472 kb on + strand at 738.480 kb on - strand at 738.491 kb on + strand at 738.515 kb on + strand at 738.551 kb on - strand at 738.551 kb on - strand at 738.553 kb on + strand at 738.553 kb on + strand at 738.553 kb on + strand at 738.553 kb on + strand at 738.739 kb on - strand, within CSW01_18160 at 738.787 kb on + strand, within CSW01_18160 at 738.922 kb on + strand, within CSW01_18160 at 738.930 kb on - strand, within CSW01_18160 at 738.939 kb on + strand, within CSW01_18160 at 739.060 kb on - strand, within CSW01_18160 at 739.078 kb on + strand, within CSW01_18160 at 739.078 kb on + strand, within CSW01_18160 at 739.086 kb on - strand, within CSW01_18160 at 739.086 kb on - strand, within CSW01_18160 at 739.086 kb on - strand, within CSW01_18160 at 739.152 kb on + strand at 739.195 kb on + strand at 739.239 kb on + strand at 739.261 kb on + strand at 739.396 kb on - strand at 739.402 kb on + strand at 739.402 kb on + strand at 739.402 kb on + strand at 739.410 kb on - strand at 739.412 kb on + strand at 739.420 kb on - strand at 739.514 kb on + strand at 739.514 kb on + strand at 739.522 kb on - strand at 739.547 kb on + strand, within CSW01_18165 at 739.681 kb on - strand, within CSW01_18165 at 739.762 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.896 kb on + strand, within CSW01_18165 at 739.904 kb on - strand, within CSW01_18165 at 739.904 kb on - strand, within CSW01_18165 at 739.934 kb on + strand at 739.942 kb on - strand at 739.991 kb on + strand at 739.997 kb on - strand at 739.998 kb on - strand at 740.019 kb on - strand at 740.111 kb on + strand at 740.111 kb on + strand at 740.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 737,773 + -2.1 737,882 - +0.6 737,896 + +1.4 737,959 + CSW01_18155 0.17 +0.1 737,959 + CSW01_18155 0.17 -0.7 737,989 - CSW01_18155 0.21 -0.0 738,136 + CSW01_18155 0.43 -2.6 738,141 + CSW01_18155 0.43 -2.4 738,224 - CSW01_18155 0.56 -2.1 738,312 - CSW01_18155 0.68 -1.8 738,407 + CSW01_18155 0.82 -2.3 738,455 + CSW01_18155 0.89 +0.4 738,472 + -3.3 738,480 - +1.2 738,491 + +1.6 738,515 + -2.3 738,551 - -2.4 738,551 - +0.1 738,553 + +0.0 738,553 + +1.3 738,553 + +2.0 738,553 + +1.6 738,739 - CSW01_18160 0.15 +1.5 738,787 + CSW01_18160 0.24 -0.8 738,922 + CSW01_18160 0.51 -1.1 738,930 - CSW01_18160 0.52 +0.5 738,939 + CSW01_18160 0.54 -1.6 739,060 - CSW01_18160 0.78 +0.2 739,078 + CSW01_18160 0.81 -2.6 739,078 + CSW01_18160 0.81 -1.8 739,086 - CSW01_18160 0.83 -0.4 739,086 - CSW01_18160 0.83 -0.4 739,086 - CSW01_18160 0.83 -3.2 739,152 + -0.7 739,195 + -1.4 739,239 + -3.0 739,261 + -2.8 739,396 - -1.3 739,402 + +0.3 739,402 + -2.3 739,402 + +2.0 739,410 - -0.6 739,412 + +0.1 739,420 - +0.5 739,514 + -0.2 739,514 + -1.4 739,522 - +0.5 739,547 + CSW01_18165 0.11 +0.6 739,681 - CSW01_18165 0.39 -0.7 739,762 + CSW01_18165 0.56 +0.9 739,896 + CSW01_18165 0.83 +0.4 739,896 + CSW01_18165 0.83 +0.6 739,896 + CSW01_18165 0.83 -1.2 739,896 + CSW01_18165 0.83 +1.5 739,896 + CSW01_18165 0.83 +1.4 739,896 + CSW01_18165 0.83 +0.2 739,904 - CSW01_18165 0.85 -0.7 739,904 - CSW01_18165 0.85 +0.3 739,934 + +0.0 739,942 - -1.5 739,991 + -0.4 739,997 - +1.2 739,998 - -2.1 740,019 - -0.2 740,111 + -3.3 740,111 + +0.3 740,111 + -0.4
Or see this region's nucleotide sequence