Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17960

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17950 and CSW01_17955 are separated by 217 nucleotidesCSW01_17955 and CSW01_17960 are separated by 174 nucleotidesCSW01_17960 and CSW01_17965 are separated by 52 nucleotidesCSW01_17965 and CSW01_17970 overlap by 4 nucleotides CSW01_17950: CSW01_17950 - tRNA-Leu, at 697,844 to 697,930 _17950 CSW01_17955: CSW01_17955 - lactoylglutathione lyase family protein, at 698,148 to 698,648 _17955 CSW01_17960: CSW01_17960 - LysR family transcriptional regulator, at 698,823 to 699,728 _17960 CSW01_17965: CSW01_17965 - arginine transporter permease subunit ArtM, at 699,781 to 700,449 _17965 CSW01_17970: CSW01_17970 - ABC transporter, at 700,446 to 701,135 _17970 Position (kb) 698 699 700Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 697.828 kb on + strandat 697.832 kb on + strandat 697.851 kb on - strandat 697.968 kb on - strandat 698.114 kb on - strandat 698.167 kb on + strandat 698.175 kb on - strandat 698.175 kb on - strandat 698.185 kb on - strandat 698.278 kb on + strand, within CSW01_17955at 698.489 kb on + strand, within CSW01_17955at 698.502 kb on - strand, within CSW01_17955at 698.524 kb on + strand, within CSW01_17955at 698.524 kb on + strand, within CSW01_17955at 698.567 kb on - strand, within CSW01_17955at 698.580 kb on - strand, within CSW01_17955at 698.580 kb on - strand, within CSW01_17955at 698.636 kb on + strandat 698.644 kb on - strandat 698.678 kb on + strandat 698.697 kb on + strandat 698.705 kb on - strandat 698.720 kb on - strandat 698.720 kb on - strandat 698.768 kb on - strandat 698.839 kb on + strandat 698.869 kb on - strandat 699.084 kb on - strand, within CSW01_17960at 699.100 kb on + strand, within CSW01_17960at 699.112 kb on + strand, within CSW01_17960at 699.120 kb on - strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.170 kb on + strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.184 kb on - strand, within CSW01_17960at 699.259 kb on + strand, within CSW01_17960at 699.302 kb on - strand, within CSW01_17960at 699.324 kb on - strand, within CSW01_17960at 699.324 kb on - strand, within CSW01_17960at 699.376 kb on + strand, within CSW01_17960at 699.395 kb on + strand, within CSW01_17960at 699.403 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.532 kb on + strand, within CSW01_17960at 699.539 kb on - strand, within CSW01_17960at 699.540 kb on - strand, within CSW01_17960at 699.559 kb on - strand, within CSW01_17960at 699.640 kb on - strandat 699.705 kb on + strandat 699.768 kb on - strandat 699.779 kb on + strandat 699.882 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.968 kb on - strand, within CSW01_17965at 700.005 kb on + strand, within CSW01_17965at 700.022 kb on + strand, within CSW01_17965at 700.035 kb on - strand, within CSW01_17965at 700.115 kb on + strand, within CSW01_17965at 700.123 kb on - strand, within CSW01_17965at 700.148 kb on - strand, within CSW01_17965at 700.220 kb on + strand, within CSW01_17965at 700.228 kb on - strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.288 kb on + strand, within CSW01_17965at 700.296 kb on - strand, within CSW01_17965at 700.301 kb on + strand, within CSW01_17965at 700.302 kb on + strand, within CSW01_17965at 700.332 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.348 kb on + strand, within CSW01_17965at 700.354 kb on - strand, within CSW01_17965at 700.403 kb on - strandat 700.455 kb on + strandat 700.553 kb on - strand, within CSW01_17970at 700.575 kb on + strand, within CSW01_17970at 700.597 kb on - strand, within CSW01_17970at 700.602 kb on - strand, within CSW01_17970at 700.686 kb on + strand, within CSW01_17970at 700.694 kb on + strand, within CSW01_17970at 700.708 kb on + strand, within CSW01_17970at 700.713 kb on + strand, within CSW01_17970

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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697,828 + +0.1
697,832 + +0.4
697,851 - -0.3
697,968 - -0.1
698,114 - -1.9
698,167 + -2.5
698,175 - -0.4
698,175 - +1.7
698,185 - +2.5
698,278 + CSW01_17955 0.26 +0.6
698,489 + CSW01_17955 0.68 -0.6
698,502 - CSW01_17955 0.71 -2.1
698,524 + CSW01_17955 0.75 +0.6
698,524 + CSW01_17955 0.75 -3.1
698,567 - CSW01_17955 0.84 -0.6
698,580 - CSW01_17955 0.86 +0.3
698,580 - CSW01_17955 0.86 -0.4
698,636 + +1.0
698,644 - +1.0
698,678 + -0.2
698,697 + -1.3
698,705 - -0.6
698,720 - -1.1
698,720 - +0.3
698,768 - -1.8
698,839 + -0.2
698,869 - +0.3
699,084 - CSW01_17960 0.29 +1.7
699,100 + CSW01_17960 0.31 +0.5
699,112 + CSW01_17960 0.32 -1.8
699,120 - CSW01_17960 0.33 -0.1
699,169 + CSW01_17960 0.38 +0.8
699,169 + CSW01_17960 0.38 -0.6
699,169 + CSW01_17960 0.38 +2.4
699,170 + CSW01_17960 0.38 -1.2
699,177 - CSW01_17960 0.39 -0.5
699,177 - CSW01_17960 0.39 +0.5
699,177 - CSW01_17960 0.39 -1.0
699,184 - CSW01_17960 0.40 +0.9
699,259 + CSW01_17960 0.48 -2.2
699,302 - CSW01_17960 0.53 -1.2
699,324 - CSW01_17960 0.55 +1.2
699,324 - CSW01_17960 0.55 +0.0
699,376 + CSW01_17960 0.61 +2.1
699,395 + CSW01_17960 0.63 -0.8
699,403 - CSW01_17960 0.64 -0.6
699,464 - CSW01_17960 0.71 +0.9
699,464 - CSW01_17960 0.71 -3.8
699,531 + CSW01_17960 0.78 +0.6
699,531 + CSW01_17960 0.78 -0.0
699,532 + CSW01_17960 0.78 +0.1
699,539 - CSW01_17960 0.79 +0.9
699,540 - CSW01_17960 0.79 -4.0
699,559 - CSW01_17960 0.81 +0.2
699,640 - -0.6
699,705 + -1.0
699,768 - +0.6
699,779 + +0.4
699,882 - CSW01_17965 0.15 -2.9
699,963 - CSW01_17965 0.27 -1.4
699,963 - CSW01_17965 0.27 -1.8
699,963 - CSW01_17965 0.27 -0.2
699,968 - CSW01_17965 0.28 -1.8
700,005 + CSW01_17965 0.33 -0.4
700,022 + CSW01_17965 0.36 -0.6
700,035 - CSW01_17965 0.38 -0.1
700,115 + CSW01_17965 0.50 +0.1
700,123 - CSW01_17965 0.51 -2.1
700,148 - CSW01_17965 0.55 +0.6
700,220 + CSW01_17965 0.66 -2.9
700,228 - CSW01_17965 0.67 -0.3
700,230 + CSW01_17965 0.67 -2.3
700,230 + CSW01_17965 0.67 -1.0
700,230 + CSW01_17965 0.67 -1.4
700,230 + CSW01_17965 0.67 -1.5
700,238 - CSW01_17965 0.68 -2.1
700,238 - CSW01_17965 0.68 +1.0
700,238 - CSW01_17965 0.68 -3.0
700,288 + CSW01_17965 0.76 +0.6
700,296 - CSW01_17965 0.77 -1.8
700,301 + CSW01_17965 0.78 +0.2
700,302 + CSW01_17965 0.78 +0.2
700,332 + CSW01_17965 0.82 +0.7
700,339 + CSW01_17965 0.83 +1.3
700,339 + CSW01_17965 0.83 +0.7
700,339 + CSW01_17965 0.83 -0.3
700,348 + CSW01_17965 0.85 -2.1
700,354 - CSW01_17965 0.86 +1.1
700,403 - +0.9
700,455 + -0.7
700,553 - CSW01_17970 0.16 -0.3
700,575 + CSW01_17970 0.19 +0.5
700,597 - CSW01_17970 0.22 -2.5
700,602 - CSW01_17970 0.23 +0.5
700,686 + CSW01_17970 0.35 -1.1
700,694 + CSW01_17970 0.36 +0.5
700,708 + CSW01_17970 0.38 +1.0
700,713 + CSW01_17970 0.39 -1.7

Or see this region's nucleotide sequence