Experiment: ICP1_phage_23.5_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17925 and CSW01_17930 are separated by 168 nucleotides CSW01_17930 and CSW01_17935 are separated by 188 nucleotides CSW01_17935 and CSW01_17940 are separated by 84 nucleotides CSW01_17940 and CSW01_17945 are separated by 32 nucleotides
CSW01_17925: CSW01_17925 - 3-oxoacyl-ACP synthase III, at 693,764 to 694,852
_17925
CSW01_17930: CSW01_17930 - thioredoxin TrxC, at 695,021 to 695,455
_17930
CSW01_17935: CSW01_17935 - MFS transporter, at 695,644 to 696,798
_17935
CSW01_17940: CSW01_17940 - lipase, at 696,883 to 697,713
_17940
CSW01_17945: CSW01_17945 - tRNA-Cys, at 697,746 to 697,819
_17945
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.648 kb on + strand, within CSW01_17925 at 694.731 kb on - strand, within CSW01_17925 at 694.731 kb on - strand, within CSW01_17925 at 694.812 kb on + strand at 694.812 kb on + strand at 694.836 kb on + strand at 694.894 kb on + strand at 694.901 kb on + strand at 694.935 kb on + strand at 694.942 kb on + strand at 694.980 kb on - strand at 695.058 kb on + strand at 695.058 kb on + strand at 695.067 kb on - strand, within CSW01_17930 at 695.067 kb on - strand, within CSW01_17930 at 695.218 kb on + strand, within CSW01_17930 at 695.218 kb on + strand, within CSW01_17930 at 695.221 kb on - strand, within CSW01_17930 at 695.224 kb on + strand, within CSW01_17930 at 695.226 kb on - strand, within CSW01_17930 at 695.269 kb on + strand, within CSW01_17930 at 695.276 kb on + strand, within CSW01_17930 at 695.284 kb on - strand, within CSW01_17930 at 695.355 kb on + strand, within CSW01_17930 at 695.392 kb on + strand, within CSW01_17930 at 695.496 kb on + strand at 695.740 kb on + strand at 695.870 kb on + strand, within CSW01_17935 at 695.877 kb on - strand, within CSW01_17935 at 695.920 kb on + strand, within CSW01_17935 at 696.022 kb on + strand, within CSW01_17935 at 696.066 kb on - strand, within CSW01_17935 at 696.074 kb on - strand, within CSW01_17935 at 696.116 kb on - strand, within CSW01_17935 at 696.143 kb on + strand, within CSW01_17935 at 696.150 kb on + strand, within CSW01_17935 at 696.169 kb on + strand, within CSW01_17935 at 696.169 kb on + strand, within CSW01_17935 at 696.169 kb on + strand, within CSW01_17935 at 696.185 kb on + strand, within CSW01_17935 at 696.203 kb on - strand, within CSW01_17935 at 696.218 kb on - strand, within CSW01_17935 at 696.218 kb on - strand, within CSW01_17935 at 696.352 kb on - strand, within CSW01_17935 at 696.402 kb on - strand, within CSW01_17935 at 696.447 kb on - strand, within CSW01_17935 at 696.518 kb on + strand, within CSW01_17935 at 696.670 kb on - strand, within CSW01_17935 at 696.688 kb on - strand at 696.807 kb on - strand at 696.837 kb on - strand at 696.964 kb on + strand at 697.000 kb on - strand, within CSW01_17940 at 697.035 kb on + strand, within CSW01_17940 at 697.117 kb on + strand, within CSW01_17940 at 697.125 kb on - strand, within CSW01_17940 at 697.135 kb on - strand, within CSW01_17940 at 697.141 kb on + strand, within CSW01_17940 at 697.141 kb on + strand, within CSW01_17940 at 697.164 kb on - strand, within CSW01_17940 at 697.215 kb on - strand, within CSW01_17940 at 697.318 kb on + strand, within CSW01_17940 at 697.424 kb on + strand, within CSW01_17940 at 697.454 kb on - strand, within CSW01_17940 at 697.504 kb on + strand, within CSW01_17940 at 697.504 kb on + strand, within CSW01_17940
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1 remove 694,648 + CSW01_17925 0.81 -1.2 694,731 - CSW01_17925 0.89 -0.4 694,731 - CSW01_17925 0.89 -0.8 694,812 + +1.3 694,812 + -2.4 694,836 + +0.2 694,894 + -0.3 694,901 + -2.1 694,935 + -0.2 694,942 + +0.9 694,980 - -0.5 695,058 + -0.7 695,058 + -0.9 695,067 - CSW01_17930 0.11 -2.6 695,067 - CSW01_17930 0.11 +1.9 695,218 + CSW01_17930 0.45 +0.1 695,218 + CSW01_17930 0.45 +0.4 695,221 - CSW01_17930 0.46 -0.4 695,224 + CSW01_17930 0.47 +0.8 695,226 - CSW01_17930 0.47 -0.5 695,269 + CSW01_17930 0.57 +1.4 695,276 + CSW01_17930 0.59 +0.8 695,284 - CSW01_17930 0.60 -0.3 695,355 + CSW01_17930 0.77 +2.5 695,392 + CSW01_17930 0.85 -0.1 695,496 + -1.1 695,740 + -0.1 695,870 + CSW01_17935 0.20 -2.3 695,877 - CSW01_17935 0.20 +0.7 695,920 + CSW01_17935 0.24 +0.7 696,022 + CSW01_17935 0.33 -0.2 696,066 - CSW01_17935 0.37 -2.8 696,074 - CSW01_17935 0.37 -1.6 696,116 - CSW01_17935 0.41 -0.9 696,143 + CSW01_17935 0.43 -1.1 696,150 + CSW01_17935 0.44 -0.7 696,169 + CSW01_17935 0.45 -0.7 696,169 + CSW01_17935 0.45 -0.2 696,169 + CSW01_17935 0.45 -2.2 696,185 + CSW01_17935 0.47 -1.0 696,203 - CSW01_17935 0.48 +0.3 696,218 - CSW01_17935 0.50 -0.9 696,218 - CSW01_17935 0.50 -1.1 696,352 - CSW01_17935 0.61 +0.9 696,402 - CSW01_17935 0.66 +0.1 696,447 - CSW01_17935 0.70 -0.2 696,518 + CSW01_17935 0.76 +0.4 696,670 - CSW01_17935 0.89 +1.5 696,688 - +1.8 696,807 - -2.1 696,837 - -1.0 696,964 + -2.1 697,000 - CSW01_17940 0.14 -0.1 697,035 + CSW01_17940 0.18 +0.5 697,117 + CSW01_17940 0.28 +1.0 697,125 - CSW01_17940 0.29 +0.4 697,135 - CSW01_17940 0.30 +0.5 697,141 + CSW01_17940 0.31 +1.7 697,141 + CSW01_17940 0.31 +0.8 697,164 - CSW01_17940 0.34 +1.7 697,215 - CSW01_17940 0.40 -2.5 697,318 + CSW01_17940 0.52 -2.1 697,424 + CSW01_17940 0.65 -0.6 697,454 - CSW01_17940 0.69 +0.4 697,504 + CSW01_17940 0.75 +1.1 697,504 + CSW01_17940 0.75 -1.6
Or see this region's nucleotide sequence