Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17655

Experiment: ICP1_phage_23.5_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17650 and CSW01_17655 are separated by 670 nucleotidesCSW01_17655 and CSW01_17660 are separated by 3 nucleotides CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243 _17650 CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816 _17655 CSW01_17660: CSW01_17660 - protein translocase subunit SecD, at 629,820 to 631,658 _17660 Position (kb) 628 629 630Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 627.923 kb on - strand, within CSW01_17650at 628.066 kb on + strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.122 kb on - strand, within CSW01_17650at 628.125 kb on + strand, within CSW01_17650at 628.178 kb on - strandat 628.198 kb on + strandat 628.249 kb on + strandat 628.250 kb on - strandat 628.282 kb on - strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.292 kb on + strandat 628.298 kb on - strandat 628.298 kb on - strandat 628.310 kb on - strandat 628.315 kb on - strandat 628.325 kb on + strandat 628.330 kb on - strandat 628.330 kb on - strandat 628.670 kb on + strandat 628.689 kb on + strandat 628.716 kb on + strandat 628.724 kb on - strandat 628.724 kb on - strandat 628.893 kb on + strandat 628.947 kb on - strandat 628.950 kb on - strandat 628.955 kb on - strandat 628.956 kb on + strandat 628.975 kb on + strandat 628.979 kb on + strandat 628.980 kb on + strandat 628.982 kb on - strandat 628.984 kb on + strandat 629.062 kb on - strand, within CSW01_17655at 629.122 kb on + strand, within CSW01_17655at 629.195 kb on - strand, within CSW01_17655at 629.419 kb on + strand, within CSW01_17655at 629.502 kb on + strand, within CSW01_17655at 629.520 kb on + strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.551 kb on + strand, within CSW01_17655at 629.811 kb on + strandat 629.904 kb on + strandat 629.937 kb on + strandat 629.945 kb on - strandat 630.027 kb on + strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.065 kb on - strand, within CSW01_17660at 630.097 kb on - strand, within CSW01_17660at 630.143 kb on - strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.172 kb on - strand, within CSW01_17660at 630.356 kb on + strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.648 kb on + strand, within CSW01_17660at 630.697 kb on - strand, within CSW01_17660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
remove
627,923 - CSW01_17650 0.57 +2.4
628,066 + CSW01_17650 0.76 -4.0
628,074 - CSW01_17650 0.77 +2.3
628,074 - CSW01_17650 0.77 -1.8
628,122 - CSW01_17650 0.84 -0.8
628,125 + CSW01_17650 0.84 -0.1
628,178 - +0.4
628,198 + +0.4
628,249 + +0.1
628,250 - +0.8
628,282 - -0.0
628,290 + +0.1
628,290 + -1.0
628,290 + +0.7
628,292 + -0.5
628,298 - +0.2
628,298 - +0.4
628,310 - +0.6
628,315 - +1.0
628,325 + +0.4
628,330 - +0.8
628,330 - +1.5
628,670 + -1.5
628,689 + -1.8
628,716 + +0.9
628,724 - -2.2
628,724 - +0.0
628,893 + +0.4
628,947 - +0.1
628,950 - -0.6
628,955 - +0.3
628,956 + -0.4
628,975 + +0.3
628,979 + -0.5
628,980 + -0.4
628,982 - -0.2
628,984 + +1.4
629,062 - CSW01_17655 0.16 +1.5
629,122 + CSW01_17655 0.23 -2.8
629,195 - CSW01_17655 0.31 +0.1
629,419 + CSW01_17655 0.56 -2.3
629,502 + CSW01_17655 0.65 +1.3
629,520 + CSW01_17655 0.67 +0.5
629,528 - CSW01_17655 0.68 +1.8
629,528 - CSW01_17655 0.68 +0.8
629,551 + CSW01_17655 0.71 -0.2
629,811 + +1.3
629,904 + +1.0
629,937 + -0.4
629,945 - +2.4
630,027 + CSW01_17660 0.11 +0.8
630,035 - CSW01_17660 0.12 -1.4
630,035 - CSW01_17660 0.12 -1.2
630,065 - CSW01_17660 0.13 -0.8
630,097 - CSW01_17660 0.15 +2.1
630,143 - CSW01_17660 0.18 +0.5
630,159 + CSW01_17660 0.18 -0.4
630,159 + CSW01_17660 0.18 +1.1
630,159 + CSW01_17660 0.18 +0.9
630,159 + CSW01_17660 0.18 +0.8
630,159 + CSW01_17660 0.18 +1.0
630,159 + CSW01_17660 0.18 -1.2
630,167 - CSW01_17660 0.19 -1.5
630,167 - CSW01_17660 0.19 -0.7
630,167 - CSW01_17660 0.19 -1.0
630,172 - CSW01_17660 0.19 -3.8
630,356 + CSW01_17660 0.29 +1.1
630,502 - CSW01_17660 0.37 +0.4
630,502 - CSW01_17660 0.37 -0.6
630,634 + CSW01_17660 0.44 +1.8
630,634 + CSW01_17660 0.44 -0.5
630,648 + CSW01_17660 0.45 +0.4
630,697 - CSW01_17660 0.48 +0.6

Or see this region's nucleotide sequence