Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17545

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17540 and CSW01_17545 are separated by 338 nucleotidesCSW01_17545 and CSW01_17550 are separated by 96 nucleotides CSW01_17540: CSW01_17540 - sodium:solute symporter, at 601,752 to 603,293 _17540 CSW01_17545: CSW01_17545 - MFS transporter, at 603,632 to 604,927 _17545 CSW01_17550: CSW01_17550 - nuclear transport factor 2 family protein, at 605,024 to 606,040 _17550 Position (kb) 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 602.759 kb on - strand, within CSW01_17540at 602.888 kb on + strand, within CSW01_17540at 602.888 kb on + strand, within CSW01_17540at 602.917 kb on + strand, within CSW01_17540at 602.932 kb on + strand, within CSW01_17540at 602.940 kb on - strand, within CSW01_17540at 602.941 kb on - strand, within CSW01_17540at 602.954 kb on + strand, within CSW01_17540at 602.954 kb on + strand, within CSW01_17540at 602.954 kb on + strand, within CSW01_17540at 602.974 kb on - strand, within CSW01_17540at 602.974 kb on - strand, within CSW01_17540at 602.974 kb on - strand, within CSW01_17540at 603.124 kb on + strand, within CSW01_17540at 603.137 kb on - strand, within CSW01_17540at 603.395 kb on - strandat 603.405 kb on - strandat 603.683 kb on - strandat 603.802 kb on + strand, within CSW01_17545at 603.810 kb on - strand, within CSW01_17545at 603.810 kb on - strand, within CSW01_17545at 603.885 kb on + strand, within CSW01_17545at 603.928 kb on - strand, within CSW01_17545at 604.033 kb on + strand, within CSW01_17545at 604.039 kb on - strand, within CSW01_17545at 604.041 kb on - strand, within CSW01_17545at 604.185 kb on - strand, within CSW01_17545at 604.202 kb on + strand, within CSW01_17545at 604.266 kb on - strand, within CSW01_17545at 604.268 kb on + strand, within CSW01_17545at 604.276 kb on - strand, within CSW01_17545at 604.276 kb on - strand, within CSW01_17545at 604.356 kb on - strand, within CSW01_17545at 604.566 kb on + strand, within CSW01_17545at 604.711 kb on - strand, within CSW01_17545at 604.719 kb on + strand, within CSW01_17545at 604.761 kb on + strand, within CSW01_17545at 604.897 kb on + strandat 604.978 kb on + strandat 604.983 kb on + strandat 605.072 kb on - strandat 605.148 kb on + strand, within CSW01_17550at 605.345 kb on - strand, within CSW01_17550at 605.386 kb on + strand, within CSW01_17550at 605.386 kb on + strand, within CSW01_17550at 605.386 kb on + strand, within CSW01_17550at 605.392 kb on - strand, within CSW01_17550at 605.423 kb on + strand, within CSW01_17550at 605.464 kb on + strand, within CSW01_17550at 605.505 kb on + strand, within CSW01_17550at 605.513 kb on - strand, within CSW01_17550at 605.524 kb on - strand, within CSW01_17550at 605.571 kb on + strand, within CSW01_17550at 605.610 kb on - strand, within CSW01_17550at 605.627 kb on + strand, within CSW01_17550at 605.632 kb on + strand, within CSW01_17550at 605.635 kb on - strand, within CSW01_17550at 605.635 kb on - strand, within CSW01_17550at 605.635 kb on - strand, within CSW01_17550at 605.648 kb on - strand, within CSW01_17550at 605.748 kb on - strand, within CSW01_17550at 605.806 kb on + strand, within CSW01_17550at 605.814 kb on - strand, within CSW01_17550

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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602,759 - CSW01_17540 0.65 +0.0
602,888 + CSW01_17540 0.74 -0.5
602,888 + CSW01_17540 0.74 +0.9
602,917 + CSW01_17540 0.76 -0.8
602,932 + CSW01_17540 0.77 -1.4
602,940 - CSW01_17540 0.77 +0.4
602,941 - CSW01_17540 0.77 +0.3
602,954 + CSW01_17540 0.78 +0.2
602,954 + CSW01_17540 0.78 -0.9
602,954 + CSW01_17540 0.78 -0.3
602,974 - CSW01_17540 0.79 +3.4
602,974 - CSW01_17540 0.79 -1.0
602,974 - CSW01_17540 0.79 +1.0
603,124 + CSW01_17540 0.89 +0.3
603,137 - CSW01_17540 0.90 +1.8
603,395 - -1.0
603,405 - -1.8
603,683 - -0.7
603,802 + CSW01_17545 0.13 -0.6
603,810 - CSW01_17545 0.14 -2.0
603,810 - CSW01_17545 0.14 -0.8
603,885 + CSW01_17545 0.20 -1.0
603,928 - CSW01_17545 0.23 -2.4
604,033 + CSW01_17545 0.31 +0.9
604,039 - CSW01_17545 0.31 -0.3
604,041 - CSW01_17545 0.32 -0.3
604,185 - CSW01_17545 0.43 +0.9
604,202 + CSW01_17545 0.44 -2.5
604,266 - CSW01_17545 0.49 -0.2
604,268 + CSW01_17545 0.49 +0.8
604,276 - CSW01_17545 0.50 +1.0
604,276 - CSW01_17545 0.50 -0.2
604,356 - CSW01_17545 0.56 +1.0
604,566 + CSW01_17545 0.72 +0.9
604,711 - CSW01_17545 0.83 +0.4
604,719 + CSW01_17545 0.84 -2.5
604,761 + CSW01_17545 0.87 -0.1
604,897 + +0.7
604,978 + -0.0
604,983 + -0.2
605,072 - +2.0
605,148 + CSW01_17550 0.12 -2.4
605,345 - CSW01_17550 0.32 -0.1
605,386 + CSW01_17550 0.36 +0.7
605,386 + CSW01_17550 0.36 -0.5
605,386 + CSW01_17550 0.36 -1.3
605,392 - CSW01_17550 0.36 -1.6
605,423 + CSW01_17550 0.39 -1.9
605,464 + CSW01_17550 0.43 -0.9
605,505 + CSW01_17550 0.47 -0.3
605,513 - CSW01_17550 0.48 +0.4
605,524 - CSW01_17550 0.49 -2.4
605,571 + CSW01_17550 0.54 -1.0
605,610 - CSW01_17550 0.58 -0.9
605,627 + CSW01_17550 0.59 +1.1
605,632 + CSW01_17550 0.60 +0.0
605,635 - CSW01_17550 0.60 -0.6
605,635 - CSW01_17550 0.60 -0.7
605,635 - CSW01_17550 0.60 +0.6
605,648 - CSW01_17550 0.61 -1.1
605,748 - CSW01_17550 0.71 -0.5
605,806 + CSW01_17550 0.77 +0.0
605,814 - CSW01_17550 0.78 -3.0

Or see this region's nucleotide sequence