Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17430

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17415 and CSW01_17420 are separated by 16 nucleotidesCSW01_17420 and CSW01_17425 are separated by 154 nucleotidesCSW01_17425 and CSW01_17430 are separated by 65 nucleotidesCSW01_17430 and CSW01_17435 are separated by 92 nucleotidesCSW01_17435 and CSW01_17440 are separated by 115 nucleotides CSW01_17415: CSW01_17415 - hypothetical protein, at 575,616 to 576,035 _17415 CSW01_17420: CSW01_17420 - transcriptional regulator, at 576,052 to 576,369 _17420 CSW01_17425: CSW01_17425 - DUF2892 domain-containing protein, at 576,524 to 576,709 _17425 CSW01_17430: CSW01_17430 - NADH oxidase, at 576,775 to 578,478 _17430 CSW01_17435: CSW01_17435 - VOC family protein, at 578,571 to 578,951 _17435 CSW01_17440: CSW01_17440 - hemolysin, at 579,067 to 580,812 _17440 Position (kb) 576 577 578 579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 575.809 kb on - strand, within CSW01_17415at 575.827 kb on - strand, within CSW01_17415at 575.834 kb on + strand, within CSW01_17415at 575.835 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.985 kb on - strand, within CSW01_17415at 576.001 kb on - strandat 576.121 kb on - strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.179 kb on - strand, within CSW01_17420at 576.179 kb on - strand, within CSW01_17420at 576.179 kb on - strand, within CSW01_17420at 576.212 kb on - strand, within CSW01_17420at 576.222 kb on - strand, within CSW01_17420at 576.225 kb on + strand, within CSW01_17420at 576.251 kb on + strand, within CSW01_17420at 576.556 kb on - strand, within CSW01_17425at 576.566 kb on + strand, within CSW01_17425at 576.574 kb on - strand, within CSW01_17425at 576.579 kb on - strand, within CSW01_17425at 576.670 kb on - strand, within CSW01_17425at 576.723 kb on - strandat 576.723 kb on - strandat 576.740 kb on + strandat 576.768 kb on - strandat 576.774 kb on - strandat 576.808 kb on + strandat 577.041 kb on + strand, within CSW01_17430at 577.041 kb on + strand, within CSW01_17430at 577.041 kb on + strand, within CSW01_17430at 577.051 kb on - strand, within CSW01_17430at 577.051 kb on - strand, within CSW01_17430at 577.115 kb on + strand, within CSW01_17430at 577.115 kb on + strand, within CSW01_17430at 577.120 kb on + strand, within CSW01_17430at 577.180 kb on + strand, within CSW01_17430at 577.236 kb on - strand, within CSW01_17430at 577.236 kb on - strand, within CSW01_17430at 577.262 kb on + strand, within CSW01_17430at 577.426 kb on + strand, within CSW01_17430at 577.431 kb on + strand, within CSW01_17430at 577.523 kb on - strand, within CSW01_17430at 577.693 kb on + strand, within CSW01_17430at 577.750 kb on + strand, within CSW01_17430at 577.822 kb on - strand, within CSW01_17430at 577.925 kb on - strand, within CSW01_17430at 578.054 kb on + strand, within CSW01_17430at 578.064 kb on + strand, within CSW01_17430at 578.086 kb on - strand, within CSW01_17430at 578.096 kb on + strand, within CSW01_17430at 578.096 kb on + strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.114 kb on - strand, within CSW01_17430at 578.119 kb on + strand, within CSW01_17430at 578.127 kb on - strand, within CSW01_17430at 578.156 kb on + strand, within CSW01_17430at 578.256 kb on - strand, within CSW01_17430at 578.328 kb on - strandat 578.328 kb on - strandat 578.420 kb on + strandat 578.447 kb on - strandat 578.447 kb on - strandat 578.472 kb on + strandat 578.472 kb on + strandat 578.472 kb on + strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.522 kb on - strandat 578.534 kb on - strandat 578.602 kb on + strandat 578.730 kb on - strand, within CSW01_17435at 578.747 kb on - strand, within CSW01_17435at 578.772 kb on - strand, within CSW01_17435at 579.012 kb on + strandat 579.055 kb on + strandat 579.091 kb on - strandat 579.109 kb on + strandat 579.174 kb on - strandat 579.259 kb on + strand, within CSW01_17440at 579.262 kb on - strand, within CSW01_17440at 579.287 kb on - strand, within CSW01_17440at 579.312 kb on - strand, within CSW01_17440at 579.362 kb on + strand, within CSW01_17440at 579.381 kb on - strand, within CSW01_17440at 579.381 kb on - strand, within CSW01_17440at 579.417 kb on - strand, within CSW01_17440at 579.469 kb on - strand, within CSW01_17440

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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575,809 - CSW01_17415 0.46 +1.1
575,827 - CSW01_17415 0.50 -3.3
575,834 + CSW01_17415 0.52 +0.3
575,835 - CSW01_17415 0.52 -1.0
575,842 - CSW01_17415 0.54 -3.1
575,842 - CSW01_17415 0.54 -0.6
575,842 - CSW01_17415 0.54 +1.0
575,844 + CSW01_17415 0.54 -2.4
575,844 + CSW01_17415 0.54 +1.5
575,844 + CSW01_17415 0.54 -1.0
575,985 - CSW01_17415 0.88 +0.3
576,001 - +0.1
576,121 - CSW01_17420 0.22 +0.5
576,171 + CSW01_17420 0.37 -0.5
576,171 + CSW01_17420 0.37 -1.3
576,171 + CSW01_17420 0.37 -0.1
576,171 + CSW01_17420 0.37 -1.2
576,179 - CSW01_17420 0.40 -1.9
576,179 - CSW01_17420 0.40 +1.6
576,179 - CSW01_17420 0.40 -1.6
576,212 - CSW01_17420 0.50 -1.0
576,222 - CSW01_17420 0.53 -0.7
576,225 + CSW01_17420 0.54 +0.1
576,251 + CSW01_17420 0.63 +1.9
576,556 - CSW01_17425 0.17 -0.6
576,566 + CSW01_17425 0.23 -0.4
576,574 - CSW01_17425 0.27 +0.1
576,579 - CSW01_17425 0.30 +0.7
576,670 - CSW01_17425 0.78 -2.3
576,723 - +0.7
576,723 - +0.5
576,740 + -0.5
576,768 - +0.4
576,774 - +0.7
576,808 + -3.2
577,041 + CSW01_17430 0.16 +0.8
577,041 + CSW01_17430 0.16 +1.1
577,041 + CSW01_17430 0.16 +0.2
577,051 - CSW01_17430 0.16 -1.9
577,051 - CSW01_17430 0.16 +3.0
577,115 + CSW01_17430 0.20 +0.3
577,115 + CSW01_17430 0.20 +2.7
577,120 + CSW01_17430 0.20 -1.7
577,180 + CSW01_17430 0.24 +1.6
577,236 - CSW01_17430 0.27 -1.2
577,236 - CSW01_17430 0.27 +0.9
577,262 + CSW01_17430 0.29 -0.5
577,426 + CSW01_17430 0.38 -0.4
577,431 + CSW01_17430 0.38 +0.3
577,523 - CSW01_17430 0.44 +0.5
577,693 + CSW01_17430 0.54 +1.4
577,750 + CSW01_17430 0.57 -2.0
577,822 - CSW01_17430 0.61 -0.3
577,925 - CSW01_17430 0.67 -0.3
578,054 + CSW01_17430 0.75 -1.2
578,064 + CSW01_17430 0.76 -1.0
578,086 - CSW01_17430 0.77 -0.3
578,096 + CSW01_17430 0.78 +0.9
578,096 + CSW01_17430 0.78 -1.7
578,104 - CSW01_17430 0.78 -1.2
578,104 - CSW01_17430 0.78 -1.1
578,104 - CSW01_17430 0.78 +1.7
578,104 - CSW01_17430 0.78 +0.4
578,104 - CSW01_17430 0.78 -0.3
578,104 - CSW01_17430 0.78 -2.2
578,104 - CSW01_17430 0.78 -0.8
578,114 - CSW01_17430 0.79 +1.3
578,119 + CSW01_17430 0.79 -0.5
578,127 - CSW01_17430 0.79 -1.6
578,156 + CSW01_17430 0.81 +1.1
578,256 - CSW01_17430 0.87 -1.6
578,328 - +0.9
578,328 - -0.1
578,420 + +0.8
578,447 - -2.7
578,447 - +1.8
578,472 + -1.1
578,472 + +1.3
578,472 + +1.8
578,480 - -1.3
578,480 - +1.3
578,480 - -1.8
578,480 - +1.9
578,522 - +0.0
578,534 - -0.6
578,602 + +1.8
578,730 - CSW01_17435 0.42 -0.8
578,747 - CSW01_17435 0.46 -0.7
578,772 - CSW01_17435 0.53 -0.8
579,012 + -0.7
579,055 + -0.6
579,091 - +1.0
579,109 + +0.5
579,174 - +0.1
579,259 + CSW01_17440 0.11 +0.2
579,262 - CSW01_17440 0.11 -0.8
579,287 - CSW01_17440 0.13 -0.3
579,312 - CSW01_17440 0.14 -2.4
579,362 + CSW01_17440 0.17 -1.8
579,381 - CSW01_17440 0.18 +1.0
579,381 - CSW01_17440 0.18 +0.2
579,417 - CSW01_17440 0.20 +2.5
579,469 - CSW01_17440 0.23 -0.1

Or see this region's nucleotide sequence