Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17175

Experiment: ICP1_phage_23.5_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17170 and CSW01_17175 overlap by 4 nucleotidesCSW01_17175 and CSW01_17180 overlap by 4 nucleotides CSW01_17170: CSW01_17170 - ABC transporter ATP-binding protein, at 523,011 to 524,603 _17170 CSW01_17175: CSW01_17175 - ABC transporter permease, at 524,600 to 525,658 _17175 CSW01_17180: CSW01_17180 - peptide ABC transporter permease, at 525,655 to 526,737 _17180 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1 2at 523.634 kb on - strand, within CSW01_17170at 523.688 kb on - strand, within CSW01_17170at 523.713 kb on + strand, within CSW01_17170at 523.713 kb on + strand, within CSW01_17170at 523.720 kb on - strand, within CSW01_17170at 523.844 kb on + strand, within CSW01_17170at 523.846 kb on + strand, within CSW01_17170at 523.852 kb on - strand, within CSW01_17170at 524.047 kb on - strand, within CSW01_17170at 524.048 kb on - strand, within CSW01_17170at 524.088 kb on + strand, within CSW01_17170at 524.088 kb on + strand, within CSW01_17170at 524.133 kb on - strand, within CSW01_17170at 524.149 kb on + strand, within CSW01_17170at 524.234 kb on - strand, within CSW01_17170at 524.250 kb on + strand, within CSW01_17170at 524.284 kb on + strand, within CSW01_17170at 524.292 kb on - strand, within CSW01_17170at 524.292 kb on - strand, within CSW01_17170at 524.292 kb on - strand, within CSW01_17170at 524.362 kb on - strand, within CSW01_17170at 524.362 kb on - strand, within CSW01_17170at 524.367 kb on - strand, within CSW01_17170at 524.372 kb on - strand, within CSW01_17170at 524.372 kb on - strand, within CSW01_17170at 524.407 kb on - strand, within CSW01_17170at 524.409 kb on - strand, within CSW01_17170at 524.516 kb on + strandat 524.516 kb on + strandat 524.516 kb on + strandat 524.519 kb on - strandat 524.549 kb on - strandat 524.598 kb on - strandat 524.662 kb on - strandat 524.730 kb on + strand, within CSW01_17175at 524.730 kb on + strand, within CSW01_17175at 524.730 kb on + strand, within CSW01_17175at 524.809 kb on + strand, within CSW01_17175at 524.859 kb on + strand, within CSW01_17175at 524.999 kb on - strand, within CSW01_17175at 525.084 kb on + strand, within CSW01_17175at 525.099 kb on - strand, within CSW01_17175at 525.115 kb on + strand, within CSW01_17175at 525.444 kb on + strand, within CSW01_17175at 525.444 kb on + strand, within CSW01_17175at 525.477 kb on + strand, within CSW01_17175at 525.485 kb on - strand, within CSW01_17175at 525.485 kb on - strand, within CSW01_17175at 525.686 kb on + strandat 525.686 kb on + strandat 525.694 kb on - strandat 525.720 kb on + strandat 525.804 kb on + strand, within CSW01_17180at 525.804 kb on + strand, within CSW01_17180at 525.804 kb on + strand, within CSW01_17180at 525.928 kb on - strand, within CSW01_17180at 526.418 kb on + strand, within CSW01_17180at 526.433 kb on - strand, within CSW01_17180at 526.617 kb on + strand, within CSW01_17180at 526.627 kb on - strand, within CSW01_17180at 526.629 kb on + strandat 526.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_23.5_MOI_rep1
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523,634 - CSW01_17170 0.39 -0.2
523,688 - CSW01_17170 0.42 +1.1
523,713 + CSW01_17170 0.44 +0.3
523,713 + CSW01_17170 0.44 +1.4
523,720 - CSW01_17170 0.45 +0.5
523,844 + CSW01_17170 0.52 -0.1
523,846 + CSW01_17170 0.52 +0.5
523,852 - CSW01_17170 0.53 +1.6
524,047 - CSW01_17170 0.65 +1.0
524,048 - CSW01_17170 0.65 -2.6
524,088 + CSW01_17170 0.68 +1.5
524,088 + CSW01_17170 0.68 -2.7
524,133 - CSW01_17170 0.70 +0.2
524,149 + CSW01_17170 0.71 -0.7
524,234 - CSW01_17170 0.77 -0.1
524,250 + CSW01_17170 0.78 -2.0
524,284 + CSW01_17170 0.80 -2.2
524,292 - CSW01_17170 0.80 -1.6
524,292 - CSW01_17170 0.80 +1.0
524,292 - CSW01_17170 0.80 +0.3
524,362 - CSW01_17170 0.85 -2.5
524,362 - CSW01_17170 0.85 +0.1
524,367 - CSW01_17170 0.85 +1.1
524,372 - CSW01_17170 0.85 +1.0
524,372 - CSW01_17170 0.85 +0.6
524,407 - CSW01_17170 0.88 +0.7
524,409 - CSW01_17170 0.88 -0.3
524,516 + +0.7
524,516 + +0.2
524,516 + -0.1
524,519 - -0.4
524,549 - -0.6
524,598 - +0.3
524,662 - -0.7
524,730 + CSW01_17175 0.12 +1.1
524,730 + CSW01_17175 0.12 +0.6
524,730 + CSW01_17175 0.12 -1.9
524,809 + CSW01_17175 0.20 +2.0
524,859 + CSW01_17175 0.24 -2.5
524,999 - CSW01_17175 0.38 +0.9
525,084 + CSW01_17175 0.46 +2.0
525,099 - CSW01_17175 0.47 -0.8
525,115 + CSW01_17175 0.49 +0.8
525,444 + CSW01_17175 0.80 +0.9
525,444 + CSW01_17175 0.80 -0.6
525,477 + CSW01_17175 0.83 -0.4
525,485 - CSW01_17175 0.84 +0.6
525,485 - CSW01_17175 0.84 +1.5
525,686 + -2.3
525,686 + -2.2
525,694 - +0.7
525,720 + -1.4
525,804 + CSW01_17180 0.14 -0.7
525,804 + CSW01_17180 0.14 +0.0
525,804 + CSW01_17180 0.14 +1.4
525,928 - CSW01_17180 0.25 -2.6
526,418 + CSW01_17180 0.70 +1.0
526,433 - CSW01_17180 0.72 -0.5
526,617 + CSW01_17180 0.89 -1.6
526,627 - CSW01_17180 0.90 -0.7
526,629 + -1.9
526,647 - -2.1

Or see this region's nucleotide sequence